Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03960 ATGGCGGTAGATGATTCGTGTTTTGTTGAATGGAAAGAACAATTTGTTTCGCAAGAGCGCGGTCATCGTGTGGTTCACTATTACCTAAAGGATTCTGCTGGAGAATCATTCCTTGCAGTTGTTGGCACTGAGAGGAGTGTTAGACACATGTGCTATGTTATTGCTGAGGATTTCCTTGAAATATGTGGAATGGAGGGTTTGTTTCCACCGGGTTTTAAATGGAGATCTAGAAGAGAAGTGGTCGATTGGCTGACTTCGATGTTATCAAAGCAGCATCTGCAGGGTGAGAGAAGCGTAAGGCCTGCTCATAATTTGGAACTAGCTCATGAGATCACAAATGGTAATGTTGAAGAAGTTACCGGTGTTTCTGCCCAAATGGTGGATGACATGGACTTTCCAAAGAGTAACTCCAAATTATTCAATTCAGACATCGTTTGGTCAGGACTCGCGTGGACATGCGGCAAACAACTCAAGCATTATCCCGCTTTTTGCAGGAACGGCATCCAAATAGGGATTCAGTCCTTTGTTTTTGTCATGGGCAACGGAGAGAACCATTATGTTGCATATTTAGACGATATGTATGAAGATAGAAGGGGGCTGAAAAAGGTAAAAGTAAGGTGGTTTCATCATAATCAGGAAGTCAAGGGTGCAATTCCCGTACGAAATCCTCACCCTCGGGAAGTTTTCATTACATCTTATTCTCAAGTCATCAGTGCCGAGTGTGTTGATGGACCTGCCACAGTCTTAACTCGCGAACACTACGAAAAATGCACACCTTATTTTTCACCCTCTTCGATAGACAGAATACATTTATGCTTTAGGCAATTAAAAGGCAACAAAGTCAAGCCCTTCGACTTAAGTAAACTGCGTGGCTACTATACTCAGCCAGCTCTTTCTTCCTTGCTCGTTGATAGTATCCCCAACGCGGAGGCCCACAGCAACAGCCTCACGGGAGAAGATGAAGATTTGGATGTCGGCGATGATACAAAGCGAGGAGCCAAAAGGAGTAGAAGCGTTAAGGATTCTCCTCCTTCTTGTAATGGTCGACAAGGGGTTAGAAAGTTGATTAGAAGTAATCAAATAATGGGATATCAAACTTTCCAGGTTGTGAATTATGTGAGGCCGGATAGGAGATTGCTTTCGCTAAAACCTATTGAATGTCAACATTGGTATAACCCAGTTTACAAGGTTGATGACAAGATAGAGTTGCTCTGTCAAGATAGTGGCATCCGAGGTTGCTGGTTCAGGTGTACGATTTTACAGGTTGCTCGGAAAAAGCTGAAAGTCCTATATGATGATGTTCAGGATGAAGATGGAAGTGGAAATCTTGAGGAGTGGGTCCCTGCTTTTAGGTTGGCCAAGCCTGATAAACTTGGGATGAGACAACCTGGCCGACTAACGATAAGGCCAGCTCCACCTTTTGAAGAACAAGAAGCGATTGTTGAGGTTGGAACTGCCGTTGATGCATGGTGGAGTGATGGCTGGTGGGAGGGTGTTGTAACTTCAATTGACAACTGTGGCGATGACAGCGTTCAAGTCTACTTTCCCGGTGAAAGCTTGCAAATGACAGTACATAAAAAGGATTTAAGAATATCTAGAGATTGGTTCGATGACACGTGGATTAGTATAAAGGCAAAGCCTGATATAACCCCAACTATATTAACTTCTGATAGCTTTAACACGAATCTCTCCTTGTCTCCATCCATGGCTAAAGAGGAAAACTCTAATGGTTTTGCTAATTCATGTCATGACATTCCTGCTAGTGAGAAGTCTAACGAAGGCGATATTTTTGAAGAGAAACTTGTTTGCAGGGATATTGCTGAAGATGAGGCTTGTCTCCAAAATGATAATTCTCCTTCAGAAAAAAATACTCAAGTTGGTGATATCGAAGATAATGGTTGTAATGATGATAAAGACAACAGTGAGAATGATGATAACAGGAATGATTATAGTGAGAATAGGGATGTAGAGGTGATTGGGACTTCTGGAGTTGACTGTAAAGGTGCACAACTAATGGAAGTGGCAGTGTGA 2031 0.4259 MAVDDSCFVEWKEQFVSQERGHRVVHYYLKDSAGESFLAVVGTERSVRHMCYVIAEDFLEICGMEGLFPPGFKWRSRREVVDWLTSMLSKQHLQGERSVRPAHNLELAHEITNGNVEEVTGVSAQMVDDMDFPKSNSKLFNSDIVWSGLAWTCGKQLKHYPAFCRNGIQIGIQSFVFVMGNGENHYVAYLDDMYEDRRGLKKVKVRWFHHNQEVKGAIPVRNPHPREVFITSYSQVISAECVDGPATVLTREHYEKCTPYFSPSSIDRIHLCFRQLKGNKVKPFDLSKLRGYYTQPALSSLLVDSIPNAEAHSNSLTGEDEDLDVGDDTKRGAKRSRSVKDSPPSCNGRQGVRKLIRSNQIMGYQTFQVVNYVRPDRRLLSLKPIECQHWYNPVYKVDDKIELLCQDSGIRGCWFRCTILQVARKKLKVLYDDVQDEDGSGNLEEWVPAFRLAKPDKLGMRQPGRLTIRPAPPFEEQEAIVEVGTAVDAWWSDGWWEGVVTSIDNCGDDSVQVYFPGESLQMTVHKKDLRISRDWFDDTWISIKAKPDITPTILTSDSFNTNLSLSPSMAKEENSNGFANSCHDIPASEKSNEGDIFEEKLVCRDIAEDEACLQNDNSPSEKNTQVGDIEDNGCNDDKDNSENDDNRNDYSENRDVEVIGTSGVDCKGAQLMEVAV 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03960 676 MobiDBLite consensus disorder prediction 614 656 - -
Vivi5g03960 676 MobiDBLite consensus disorder prediction 631 654 - -
Vivi5g03960 676 Pfam Agenet domain 398 473 IPR008395 -
Vivi5g03960 676 CDD Tudor_Agenet_AtDUF_rpt1_3 395 473 - -
Vivi5g03960 676 SMART agenet_At_2 393 458 IPR014002 -
Vivi5g03960 676 SMART agenet_At_2 479 537 IPR014002 -
Vivi5g03960 676 MobiDBLite consensus disorder prediction 315 338 - -
Vivi5g03960 676 Gene3D - 137 283 IPR043151 -
Vivi5g03960 676 MobiDBLite consensus disorder prediction 312 350 - -
Vivi5g03960 676 MobiDBLite consensus disorder prediction 614 630 - -
Vivi5g03960 676 Pfam BAH domain 174 262 IPR001025 GO:0003682
Vivi5g03960 676 SMART BAH_4 168 277 IPR001025 GO:0003682
Vivi5g03960 676 ProSiteProfiles BAH domain profile. 168 287 IPR001025 GO:0003682
Vivi5g03960 676 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 392 654 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03960 Vivi-Chr5 135223145 135227191 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03960 394 540 PHD Transcription Factor Family AT5G58610 29.193 4.15e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03960 - - gmx:100306240 966.066