Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03955 ATGAAGAGAACAAGGTGCTTCTTAGACATTAGCATAGGTGAAGAACTTGAAGGAAGAATATTGGTCGAACTTTTCAACGATATTGTACCCAAAACTGCTGAGAATTTCAGAGCTCTATGTACTGGTCAAAAAGGCATTGGTCCCAATACTAGACTGCCCCTCCATTTTAAGGGAACTTGCTTTCATCGTATTCTTAAAGGCTCTATGATTGAAGGAGGTGATATATCTGCCGGAGACGGAACGGGAGGAGAATCTATATATGGACTCAAGTTTGAAGATGAAAATTTTGAAATGAAGCATGAAAGGAAAGGGATGTTATCAATGGCGAACACCGGTCCTAATACAAATGGCTCTCAGTTTTTTATCTCTACGACCCGAACGCCTCATCTAGATGGTAAGCATGTTGTATTTGGGAAAATAGTTAAAGGAATGGGCGTGGTTCGGTCAATTGAGCACGTTGCGACTGGAGACGAGGACCGTCCTGTTCTTGATGTTAAAATTGTGGATTGTGGTGAAATTCATGAAGGAGAAGATGATGGTATAACTAACTTTTTCAAAGATGGTGATACTTATCCCGATTGGCCAGCAGACCTTGCCGAGACTCCGAGTGAACTTGAATGGTGGTTGAAATCTGTTGACTCGATCAAAGGTTTTGGTAATGAGTATTACAAGAAACAAGAGTACAAAATGGCTCTAAGAAAGTATCGAAAGGCTTTACGTTACCTGGATATTTGTTGGGAGAAGGAAGGGATTGATGAAGAGAAAAGTTCATTATTGAGAAAAACAAAGTCTCAGATATTTACAAACAGCTCGGCTTGTAAATTGAAATTAGGGGATACTAAAGGAGCATTATTGGACACAGAATTTGCGATGCGCGAAGGTGATAATAATGCCAAAGCTTTATTCCGCCAAGGACAGGCATACATGGTACTCCACGACATTGATGCTGCAGTTGAAAGCTTTAAGAAAGCACTGACATTGGAACCAAATGATGCTGGAATAAAAAAGGAACTCGCTGCTGCGAGAAAGAAGATTTCGGATAGGACTGATCTAGAGAAAAAAGCATATAGTAAGATGTTCCAAAAACACAAAGGTTTGTGTTGA 1104 0.4013 MKRTRCFLDISIGEELEGRILVELFNDIVPKTAENFRALCTGQKGIGPNTRLPLHFKGTCFHRILKGSMIEGGDISAGDGTGGESIYGLKFEDENFEMKHERKGMLSMANTGPNTNGSQFFISTTRTPHLDGKHVVFGKIVKGMGVVRSIEHVATGDEDRPVLDVKIVDCGEIHEGEDDGITNFFKDGDTYPDWPADLAETPSELEWWLKSVDSIKGFGNEYYKKQEYKMALRKYRKALRYLDICWEKEGIDEEKSSLLRKTKSQIFTNSSACKLKLGDTKGALLDTEFAMREGDNNAKALFRQGQAYMVLHDIDAAVESFKKALTLEPNDAGIKKELAAARKKISDRTDLEKKAYSKMFQKHKGLC 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03955 367 Gene3D - 1 179 IPR029000 -
Vivi5g03955 367 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 172 IPR002130 GO:0000413|GO:0003755
Vivi5g03955 367 SUPERFAMILY Cyclophilin-like 2 177 IPR029000 -
Vivi5g03955 367 Gene3D Tetratricopeptide repeat domain 212 361 IPR011990 GO:0005515
Vivi5g03955 367 FunFam peptidyl-prolyl cis-trans isomerase D 210 361 - -
Vivi5g03955 367 ProSiteProfiles TPR repeat region circular profile. 298 331 - -
Vivi5g03955 367 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 5 173 - -
Vivi5g03955 367 FunFam Peptidyl-prolyl cis-trans isomerase D 1 178 - -
Vivi5g03955 367 ProSiteProfiles TPR repeat profile. 298 331 IPR019734 GO:0005515
Vivi5g03955 367 SMART tpr_5 298 331 IPR019734 GO:0005515
Vivi5g03955 367 SMART tpr_5 212 245 IPR019734 GO:0005515
Vivi5g03955 367 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 119 131 IPR002130 GO:0000413|GO:0003755
Vivi5g03955 367 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 24 39 IPR002130 GO:0000413|GO:0003755
Vivi5g03955 367 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 61 73 IPR002130 GO:0000413|GO:0003755
Vivi5g03955 367 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 104 119 IPR002130 GO:0000413|GO:0003755
Vivi5g03955 367 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 132 147 IPR002130 GO:0000413|GO:0003755
Vivi5g03955 367 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 8 171 IPR002130 GO:0000413|GO:0003755
Vivi5g03955 367 SUPERFAMILY TPR-like 208 362 IPR011990 GO:0005515
Vivi5g03955 367 Pfam Tetratricopeptide repeat 298 331 IPR001440 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03955 Vivi-Chr5 135156268 135159546 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03955 14 170 U-box Gene Family AT5G67530 40.506 1.34e-32 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03955 K05864 - gmx:100813496 659.833