Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03946 ATGGCTCAACAAACTAGCAGTGGAGATCTGAATCAGAACCCAAACCCGAGCCAGAACCCGAGCCAGACTCCAAACCAGAACCAAAACCAGCCACAGCAGTGGGCCCAGCCCCATCAGTATCAGCAACAATGGATGTCCATGCAGTATCCTGCTACTGCTATGGCTATGATGCAACAGCAGATGATGATGTATCCACAGCATTACATGTCGTATGTTCATCCTCATCATTATCAGCCGCCTCACCAGCAGCAACCGTCTCCACCGCCGAGTACTCAGAGTCATCATGGTCATGGTCATGGCCATCATCCTCATCACCAGCAGCAGCATCAGCAGAAACAAGTTTCTCCTGAAGAGATCAGGACGATCTGGATTGGTGACCTTCATCATTGGATGGACGAGACTTTTCTTCATAACTGCTTTGCTCATACGGGCGAGGTTGTATCGGCCAAGGTCATACGTAATAAGCAAACTGGTGTCTCGGAGGGATATGGATTTGTCGAGTTCTATACGCGAGGAACGGCTGAGAAAGTCTTGCAGAACTTTAATGGTGCTATGATGCCAAATACAGATCAGGCGTTTCGTCTGAATTGGGCTACATTCAGCGCTGGCGGCGGTGGTGGTGGTGAAAGGCGTTCTTCTGAGGCTACTTCTGATCTCTCTGTTTTTGTAGGAGACTTAGCCATAGATGTTACTGATGCTATGCTGCAGGAGGTGTTTGCTAGCAGATTCTCATCTATTAAGGGAGCAAAAGTTGTCATTGATTCTAATACTGGTCGTTCAAAAGGTTATGGTTTTGTTAGGTTCGGTGATGACAATGAAAGGACAAGGGCAATGACTGAAATGAACGGCGTGTATTGTTCTAGCAGGCCTATGCGAGTCGGTGTTGCAACGCCAAAAAAAACTTATGGCAATCCACAACAATATTCTTCTCAAGCTGTAGTGTTGGCTGGTGGTCACTCGTCTAATGGTTCTATGGCCCAAGGTTCCCAATCTGAAGGGGATTCTAACAACACAACTATATTTGTTGGAGGGCTTGATTCTGAAATCAGCGATGAGGATCTGAGACAACCATTTTTGCAATATGGCGATGTTATCTCTGTGAAAATTCCAATCGGTAAAGGATGCGGCTTTGTTCAACTTGCTGACAGAAAGAATGCTGAGGAAGCTATTCAGGGATTGAATGGAACAGTGATTGGGAAGCAGACCGTGCGTCTTTCTTGGGGTCGCAGTCCGGGAAATAAGCATTGGAGGAATAATGACTCGAATGGAAACCATTACGGCGGGCAGGGTTATGGCGGCCACGGATACGGAGGCCATGGATATGCTGCTAGACAGAATCAGGATATAGCTATGCAACAACCTGCTGCTGCAATTCAAGGGGCTTCGTAA 1389 0.4716 MAQQTSSGDLNQNPNPSQNPSQTPNQNQNQPQQWAQPHQYQQQWMSMQYPATAMAMMQQQMMMYPQHYMSYVHPHHYQPPHQQQPSPPPSTQSHHGHGHGHHPHHQQQHQQKQVSPEEIRTIWIGDLHHWMDETFLHNCFAHTGEVVSAKVIRNKQTGVSEGYGFVEFYTRGTAEKVLQNFNGAMMPNTDQAFRLNWATFSAGGGGGGERRSSEATSDLSVFVGDLAIDVTDAMLQEVFASRFSSIKGAKVVIDSNTGRSKGYGFVRFGDDNERTRAMTEMNGVYCSSRPMRVGVATPKKTYGNPQQYSSQAVVLAGGHSSNGSMAQGSQSEGDSNNTTIFVGGLDSEISDEDLRQPFLQYGDVISVKIPIGKGCGFVQLADRKNAEEAIQGLNGTVIGKQTVRLSWGRSPGNKHWRNNDSNGNHYGGQGYGGHGYGGHGYAARQNQDIAMQQPAAAIQGAS 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03946 462 FunFam Polyadenylate-binding protein RBP47B 119 199 - -
Vivi5g03946 462 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 219 298 IPR000504 GO:0003723
Vivi5g03946 462 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 338 410 IPR000504 GO:0003723
Vivi5g03946 462 Gene3D - 119 199 IPR012677 -
Vivi5g03946 462 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 107 414 - -
Vivi5g03946 462 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 200 IPR000504 GO:0003723
Vivi5g03946 462 SUPERFAMILY RNA-binding domain, RBD 98 201 IPR035979 GO:0003676
Vivi5g03946 462 MobiDBLite consensus disorder prediction 1 39 - -
Vivi5g03946 462 CDD RRM1_SECp43_like 121 201 - -
Vivi5g03946 462 MobiDBLite consensus disorder prediction 408 431 - -
Vivi5g03946 462 SUPERFAMILY RNA-binding domain, RBD 217 323 IPR035979 GO:0003676
Vivi5g03946 462 MobiDBLite consensus disorder prediction 408 426 - -
Vivi5g03946 462 SMART rrm1_1 220 294 IPR000504 GO:0003723
Vivi5g03946 462 SMART rrm1_1 339 406 IPR000504 GO:0003723
Vivi5g03946 462 SMART rrm1_1 121 196 IPR000504 GO:0003723
Vivi5g03946 462 Gene3D - 317 447 IPR012677 -
Vivi5g03946 462 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 189 IPR000504 GO:0003723
Vivi5g03946 462 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 340 403 IPR000504 GO:0003723
Vivi5g03946 462 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 221 290 IPR000504 GO:0003723
Vivi5g03946 462 Gene3D - 207 314 IPR012677 -
Vivi5g03946 462 FunFam Polyadenylate-binding protein RBP47 320 442 - -
Vivi5g03946 462 SUPERFAMILY RNA-binding domain, RBD 329 440 IPR035979 GO:0003676
Vivi5g03946 462 MobiDBLite consensus disorder prediction 74 116 - -
Vivi5g03946 462 FunFam Polyadenylate-binding protein RBP47B 206 309 - -
Vivi5g03946 462 CDD RRM2_SECp43_like 218 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03946 Vivi-Chr5 135022107 135025715 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03946 122 417 Eukaryotic Initiation Factors Gene Family AT4G34110 30.363 2.20e-25 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03946 - - psat:127100806 713.761