Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03939 ATGGCTCAACAAACTAGCAGTGGAGATCTGAATCAGAACCCAAACCAGAGCCAGAACCCGAGCCAGACTCCAAACCAGAACCAAAACCAGCCACAGCAGTGGGCCCAGCCCCATCAGTATCAGCAACAATGGATGTCCATGCAGTATCCTGCTACTGCTATGGCTATGATGCAGCAACAGATGATGATGTATCCACAGCATTACATGTCGTATGTTCATCCTCATCATTATCAGCCGCCTCACCAGCAGCAACCGTCTCCGCCGCCGAGTACTCAGAGTCATCATGGTCATGGTCATGGCCATCATCCTCATCACCAGCAGCAGCATCAGCAGAAACAAGTTTCTCCTGAAGAGATCAGGACGATCTGGATTGGTGACCTTCATCATTGGATGGACGAGACTTTTCTTCATAACTGCTTTGCTCATACGGGCGAGGTTGTATCGGCCAAGGTCATACGTAATAAGCAAACTGGTGTCTCGGAGGGATATGGATTTGTCGAGTTCTATACGCGAGGAACGGCTGAGAAAGTCTTGCAGAACTTTAATGGTGCTATGATGCCAAATACAGATCAGGCGTTTCGTCTGAATTGGGCTACATTCAGCGCTGGCGGCGGTGGTGGTGGTGAAAGGCGTTCTTCTGAGGCTACTTCTGATCTCTCTGTTTTTGTAGGAGACTTGGCCATAGATGTTACTGATGCTATGCTGCAGGAGGTGTTTGCTAGCAGATTCTCATCTATTAAGGGAGCAAAAGTTGTCATTGATTCTAATACTGGTCGTTCAAAAGGTTATGGTTTTGTTAGGTTCGGTGATGACAATGAAAGGACAAGGGCAATGACTGAAATGAACGGCGTGTATTGTTCTAGCAGACCTATGCGAGTCGGTGTTGCAACGCCAAAAAAAACTTATGGCAATCCACAACAATATTCTTCTCAAGTGTTGGCTGGTGGTCACTCTTCTAATGGTTCTATGGCCCAAGGTTCCCAATCTGAAGGGGATTCTAACAACACAACTATATTTGTTGGAGGGCTTGATTCTGAAATCAGCGATGAGGATCTCAGACAACCATTTTTGCAATACGGCGATGTTATCTCTGTGAAAATTCCAATCGGTAAAGGATGTGGCTTTGTTCAACTGGCTGACAGAAAGAATGCTGAGGAAGCTATTCAGGGATTGAATGGAACAGTGATTGGGAAGCAGACCGTGCGTCTTTCTTGGGGTCGCAGTCCAGGAAATAAGCATTGGAGGAATAATGACTCGAATGGAAACCATTACGGCGGGCAGGGTTATGGCGGCCACGGATACGGAGGCCATGGATATGCTGCTAGACAGAATCAGGATATAGCTATGCAACAACCTGCTGCTGCAATTCAAGGGGCTTCGTAA 1383 0.4707 MAQQTSSGDLNQNPNQSQNPSQTPNQNQNQPQQWAQPHQYQQQWMSMQYPATAMAMMQQQMMMYPQHYMSYVHPHHYQPPHQQQPSPPPSTQSHHGHGHGHHPHHQQQHQQKQVSPEEIRTIWIGDLHHWMDETFLHNCFAHTGEVVSAKVIRNKQTGVSEGYGFVEFYTRGTAEKVLQNFNGAMMPNTDQAFRLNWATFSAGGGGGGERRSSEATSDLSVFVGDLAIDVTDAMLQEVFASRFSSIKGAKVVIDSNTGRSKGYGFVRFGDDNERTRAMTEMNGVYCSSRPMRVGVATPKKTYGNPQQYSSQVLAGGHSSNGSMAQGSQSEGDSNNTTIFVGGLDSEISDEDLRQPFLQYGDVISVKIPIGKGCGFVQLADRKNAEEAIQGLNGTVIGKQTVRLSWGRSPGNKHWRNNDSNGNHYGGQGYGGHGYGGHGYAARQNQDIAMQQPAAAIQGAS 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03939 460 FunFam Polyadenylate-binding protein RBP47B 119 199 - -
Vivi5g03939 460 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 219 298 IPR000504 GO:0003723
Vivi5g03939 460 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 189 IPR000504 GO:0003723
Vivi5g03939 460 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 338 401 IPR000504 GO:0003723
Vivi5g03939 460 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 221 290 IPR000504 GO:0003723
Vivi5g03939 460 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 200 IPR000504 GO:0003723
Vivi5g03939 460 FunFam Polyadenylate-binding protein RBP47 318 440 - -
Vivi5g03939 460 Gene3D - 208 308 IPR012677 -
Vivi5g03939 460 MobiDBLite consensus disorder prediction 1 39 - -
Vivi5g03939 460 CDD RRM1_SECp43_like 121 201 - -
Vivi5g03939 460 SUPERFAMILY RNA-binding domain, RBD 98 200 IPR035979 GO:0003676
Vivi5g03939 460 SUPERFAMILY RNA-binding domain, RBD 217 321 IPR035979 GO:0003676
Vivi5g03939 460 SMART rrm1_1 337 404 IPR000504 GO:0003723
Vivi5g03939 460 SMART rrm1_1 220 294 IPR000504 GO:0003723
Vivi5g03939 460 SMART rrm1_1 121 196 IPR000504 GO:0003723
Vivi5g03939 460 SUPERFAMILY RNA-binding domain, RBD 327 438 IPR035979 GO:0003676
Vivi5g03939 460 MobiDBLite consensus disorder prediction 300 340 - -
Vivi5g03939 460 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 107 412 - -
Vivi5g03939 460 MobiDBLite consensus disorder prediction 297 340 - -
Vivi5g03939 460 Gene3D - 316 444 IPR012677 -
Vivi5g03939 460 MobiDBLite consensus disorder prediction 74 116 - -
Vivi5g03939 460 FunFam Polyadenylate-binding protein RBP47B 206 309 - -
Vivi5g03939 460 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 336 408 IPR000504 GO:0003723
Vivi5g03939 460 CDD RRM2_SECp43_like 218 297 - -
Vivi5g03939 460 Gene3D - 119 199 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03939 Vivi-Chr5 134929660 134933253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03939 310 423 Eukaryotic Initiation Factors Gene Family AT4G34110 27.941 5.94e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03939 - - psat:127100806 705.671