Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03919 ATGAACTACTCTCCTACTTCCCTCACCTCCGATCAAGAACTCTCCGTCATCGTCGCCGCTCTAACCAACGTCGTCTCCGGCTCAACCTCAACCTCCACCTCCACCTCCACCGCTATTTCAATACCCGAATTTCGCAACCCGGATCCAATAGTTCCATCCGCAACCATGGAAACCTGCCGTGAATGCAACATAGCAGGATGTCTAGGCTGCAATTTCTTCCCGGAAGAGAACAAGAAAAAACAAAAGAGAGCAAAAAAGAAGTACAGAGGAGTGAGACAGAGACCATGGGGAAAATGGGCTGCTGAAATTCGCGACCCGAGACGCGCCGCTCGTGTTTGGCTCGGAACATTCACCACGGCGGAGGAAGCTGCTAGAGCTTACGACAATGCCGCCATCGAGTTTCGTGGACCAAGAGCCAAGCTCAATTTTCCACTGGTAGATGAATCGCTTAAAAAGCAAGTGGAGGAACCAGAAGTGGTTGTTCCTAGTCCAAGTACCGAGAATGTCAAGGACGAGAATTTGAATCAAGAAATGCAAATGGAAACAACAATGGGGTTTGGGAATAATGTGGATTGCGAATTTTGGGATAGGATTGGGGAAGCTGATTTTCAGCAGCTTATGAGGTTTATGGATTTTGGCGGAGATTCTTCTGATTCAAGAACAGGAAGCACTTTTTAG 678 0.4794 MNYSPTSLTSDQELSVIVAALTNVVSGSTSTSTSTSTAISIPEFRNPDPIVPSATMETCRECNIAGCLGCNFFPEENKKKQKRAKKKYRGVRQRPWGKWAAEIRDPRRAARVWLGTFTTAEEAARAYDNAAIEFRGPRAKLNFPLVDESLKKQVEEPEVVVPSPSTENVKDENLNQEMQMETTMGFGNNVDCEFWDRIGEADFQQLMRFMDFGGDSSDSRTGSTF 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03919 225 SMART rav1_2 87 150 IPR001471 GO:0003700|GO:0006355
Vivi5g03919 225 Pfam AP2 domain 87 136 IPR001471 GO:0003700|GO:0006355
Vivi5g03919 225 SUPERFAMILY DNA-binding domain 87 145 IPR016177 GO:0003677
Vivi5g03919 225 PRINTS Ethylene responsive element binding protein signature 110 126 IPR001471 GO:0003700|GO:0006355
Vivi5g03919 225 PRINTS Ethylene responsive element binding protein signature 88 99 IPR001471 GO:0003700|GO:0006355
Vivi5g03919 225 CDD AP2 88 144 IPR001471 GO:0003700|GO:0006355
Vivi5g03919 225 Gene3D AP2/ERF domain 86 146 IPR036955 GO:0003700|GO:0006355
Vivi5g03919 225 ProSiteProfiles AP2/ERF domain profile. 87 144 IPR001471 GO:0003700|GO:0006355
Vivi5g03919 225 PANTHER DNA-BINDING DOMAIN 49 164 IPR044808 GO:0003700|GO:0009873
Vivi5g03919 225 FunFam Ethylene-responsive transcription factor 2 86 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03919 Vivi-Chr5 134578286 134579226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03919 3 147 AP2-EREBP Transcription Factor Family AT4G34410 46.486 1.71e-39 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi5g03919 AP2 3.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03919 - - psat:127106187 348.591