Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03906 ATGAGTCGTGGTGCAGCTGCTGGAGCCAAGGGAAAGAAGAAGGTGGCAACATTCACCATTGACCGTAGTAAGCCAGTGGAAGACAAGATCATGGACATTGCTTCCTTTGAGAAGTTTCTTCAAGAAAGGATCAAGGTGGGTGGCAAAGGTGATACTCTTGGTGATTCTGTCACCGTTACCTTGGAGAAATCCAAGATTACTGTTACCTCTGATAGCGACTTTTCCAAGCGCTATTTGAAGTATGTTATCAAAAAGTATTTGAAGAAGCATAATCTGAGAGATTGGCTTAGAATTATTGCCTCAATGAAAGATAGATATATCTATGAGGTGAAGTACTTTAACATTTCTGAGAACGAGGGAGAGGAAGAACATTATTTCTGA 381 0.4068 MSRGAAAGAKGKKKVATFTIDRSKPVEDKIMDIASFEKFLQERIKVGGKGDTLGDSVTVTLEKSKITVTSDSDFSKRYLKYVIKKYLKKHNLRDWLRIIASMKDRYIYEVKYFNISENEGEEEHYF 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03906 126 Pfam Ribosomal L22e protein family 13 122 IPR002671 GO:0003735|GO:0005840|GO:0006412
Vivi5g03906 126 PANTHER 60S RIBOSOMAL PROTEIN L22 2 123 IPR002671 GO:0003735|GO:0005840|GO:0006412
Vivi5g03906 126 Gene3D - 5 125 IPR038526 -
Vivi5g03906 126 FunFam 60S ribosomal protein L22-2 5 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03906 Vivi-Chr5 134405520 134415524 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03906 1 123 Cytoplasmic Ribosomal Protein Gene Family AT3G05560 77.236 2.19e-57 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03906 K02891 - csav:115723248 184.111