LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi5g03903	ATGAACTTTGCTTGGGATGCAATGAGTGTGAAGCCATCTGGAAATGTTAATCTAGCGAGGCAGTCTTCGGTATACTCGTTGACTTTTGATGAGTTACAGAGTACAATTGGTGGAGTTGGAAAAGATTTTGGATCGATGAACATGGATGAACTCTTGAAAAACATATGGAATGTTGAAGAGACTCAGGCGTTGACATCAACGGCCGGTGGAGGAGGAGTAGGAGTAGGAGGAGAAGGACCGAACAACGCAATTGGTAGTAATTTGCAAAGACAAAGTTCCTTGACTTTGCCAAGGACACTTAGTCAGAGAAAAGTTGATGAGGTTTGGAAGGAATTGATGAAAGATAATGGAGATAGTGGTTCATCTATGCCTCAGAGACAACCAACATTAGGTGAAGTGACTTTGGAAGAGTTTTTGGTGAGAGCTGGTGTTGTGAAAGAAGATGTGCCTAATCATTCTCAACAAATTGAAAGACCAAATAATAATGAATGGTTTAGTGACTTCTCTAGATCAAACAACGCCACCAATTTACTTCCCTTCCAACAACCAAATAGAAATAATGGGAATATGAGTGACAACATTAACTTAGTTCCTAAACAGGTTCCTGTTCCTCTTCCTCCTTCATCAATTAACTTGAACCACTCGCAACGGCCACCGCCCCTTTTCCCGAAACCTACAAATGTAGCATTTGCTTCTTCTCTTCATATGCTAAACAATGCTCAACTTGGTAACCCTGGTAGAAGGGGAGGGATGATTGGAGTTCAAGACCATTCAATGAATGGTGGTACATTAGTTCAAAACAGTGTAGCTCCTGGTGTTGGAATGCTTGGTTTATCCGTGGCGAATGTCCCGGCTCCTATTGCTTCTCCGGGAAGTAAACTGTCGCCGGACATAATTACAAAGCGTAATTTGGATCCTTCAATACTTTCACCAGTTGCTTATGGAATCAACAAAGGGAGGAAGTTTGGTGCTGTAGAAAAAGTTGTTGAAAGGAGACAAAGGAGAATGATAAAGAATAGGGAATCAGCTGCGAGGTCACGGGCTCGCAAACAGGCCTACACTGTGGAACTAGAGGCTGAAGTTGCAAAACTTAAGGAAGTAAACGAGGAATTACAAAGAAAACAGGCAGAGTTTATGGAAATGCAGAAAAGTAAGGAGGATCTGCTACAGGTTAACAAAATAAGATACTTGAGAAGGACACTTACAGGTCCATGGTAG	1218	0.4187	MNFAWDAMSVKPSGNVNLARQSSVYSLTFDELQSTIGGVGKDFGSMNMDELLKNIWNVEETQALTSTAGGGGVGVGGEGPNNAIGSNLQRQSSLTLPRTLSQRKVDEVWKELMKDNGDSGSSMPQRQPTLGEVTLEEFLVRAGVVKEDVPNHSQQIERPNNNEWFSDFSRSNNATNLLPFQQPNRNNGNMSDNINLVPKQVPVPLPPSSINLNHSQRPPPLFPKPTNVAFASSLHMLNNAQLGNPGRRGGMIGVQDHSMNGGTLVQNSVAPGVGMLGLSVANVPAPIASPGSKLSPDIITKRNLDPSILSPVAYGINKGRKFGAVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAEVAKLKEVNEELQRKQAEFMEMQKSKEDLLQVNKIRYLRRTLTGPW	405

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vivi5g03903	405	CDD	bZIP_plant_BZIP46	331	385	-	-
Vivi5g03903	405	PANTHER	CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED	18	405	IPR043452	GO:0003700\|GO:0045893
Vivi5g03903	405	SUPERFAMILY	Leucine zipper domain	331	381	IPR046347	GO:0003700\|GO:0006355
Vivi5g03903	405	Pfam	bZIP transcription factor	331	385	IPR004827	GO:0003700\|GO:0006355
Vivi5g03903	405	Gene3D	-	329	387	-	-
Vivi5g03903	405	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	334	349	IPR004827	GO:0003700\|GO:0006355
Vivi5g03903	405	SMART	brlzneu	327	394	IPR004827	GO:0003700\|GO:0006355
Vivi5g03903	405	Coils	Coil	350	391	-	-
Vivi5g03903	405	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	329	374	IPR004827	GO:0003700\|GO:0006355
Vivi5g03903	405	FunFam	ABSCISIC ACID-INSENSITIVE 5-like protein 5	329	386	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi5g03903	Vivi-Chr5	134362646	134365367	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi5g03903	18	405	bZIP Transcription Factor Family	AT4G34000	45.638	8.09e-95	290

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Vivi5g03903		bZIP_1	3.4e-12	CL0018

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi5g03903	K14432		-	gmx:100776600	457.603

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