Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03894 ATGGCTAACCCAAGTGGCAGATCTACACCAACAATGTCCACAGACTCCTTGGAGCAGAAGGGGAAAAATAATACTGAATCAAATGCAAGCATGATTCAATGTCCTTTAAGCCAGCAACAGCGTAGCTCTTTAGATGGCCCAGTTTCTATCCTTTGGGATATTGAAAATTGTCCTGTTCCAAGTGATGTACGCCCAGAAGATGTAGCTGGTAATATAAGAATGGCTCTGCAAGTGCATCCAGTAATTAAAGGAGCTGTTATGATGTTTTCTGCTTATGGGGATTTCAATGCTTTCCCCAGGCGACTTAGAGAGGGCTGTCAAAGAACCGGGGTTAAACTCATTGATGTTCCCAATGGGAGAAAAGATGCTGCTGACAAAGCAATCTTGGTTGACATGTTCTTATTTGCTCTTGACAATCCTCCACCATCCTCGATCATGCTAATCTCTGGAGATGTTGATTTTGCTCCAGCGCTCCACATTCTTGGTCAACGGGGATACACTATAATTCTTGTCATCCCCGCTGGGGTTGGTGTTTCATCTGCCCTATGCAATGCTGGTAAATTTGTCTGGGACTGGCCTATTGTAGCTCGTGGAGAAGGTTTTGTACCGCCCTCAAAGATGTTGGCGCAACCACGTGGAAGTTCAGTTGAGCTTGCTGGATATTTGATGGGATGCCATATCAATGATAACGGTGAAGGACAAAATGAAGAAGAAGCAATAGTTTATAGAGGGATGTCACAGAGCTATTACAACTCAAGAGAGTTTTCGTTGGTATCACAATCTCTATCTGAATATAACCCACCACACATGTCTTACTTGCCAACATCTATGAGATCATATAGCCTTCCATCTGGATTGAATGATGATGCTGGAGGACCTATGCCTTCTAGCGACAATACTGAGTGCCAGGTATGGGTACAGCCCGGGGATTTAAATGGTCTCAAGGGCCAGTTAATAAGACTGCTCGAACTATCTGGTGGATGCCTGCCCTTGGTCCGAGTTCCAGCAGAGTACCAGAAAGTTTACAGTAAGCCACTTTTTATATCTGAATATGGGGCATTTAAGTTGGTCGATCTTTTCAAAAAAATGGATGATGCCATTTCTGTGGAAGGGAAAGGGGCTCGCAGATTTGTGTATCTCAGAAACAAAAAGGGAGGCGCAAGTGCTCCTCCGCTGACTCTTGCAAAAAAAGATAAGAAGGGAAAAGGGGCACTTGAAGAGAATGCAAATGGTGTCCTCGGTGGTTGCTCTTCGGATGAGTTGTCAGATGAAGAAAGAGTAGTCCTAGAAGAACATGATGGAAGAAGTTTTACAGGAAAGCGTAATAAGGGGAGAGCAGGCAGATGTCAAATTGATGGCCGTGTTCTTGAGCAGTTTAAGTGCGAACTGCAGGAAATTCTGGTCAGCTATTCCTGTCGGATACTTCTAAGTTGTTTCGAGGCTGTATACAAGCAACGATACAAGAAACAGTTGGAATATCAGCAATTTGGTGTGGACAAGTTAGAGGATTTGTTGGAGAAAGTGAGTGATGTGGTAATAATGCACGAGGAACCAGTAAGCAAGAGGAAATTCCTGTCTGCAGTTGGTTTTCAGTAA 1596 0.4392 MANPSGRSTPTMSTDSLEQKGKNNTESNASMIQCPLSQQQRSSLDGPVSILWDIENCPVPSDVRPEDVAGNIRMALQVHPVIKGAVMMFSAYGDFNAFPRRLREGCQRTGVKLIDVPNGRKDAADKAILVDMFLFALDNPPPSSIMLISGDVDFAPALHILGQRGYTIILVIPAGVGVSSALCNAGKFVWDWPIVARGEGFVPPSKMLAQPRGSSVELAGYLMGCHINDNGEGQNEEEAIVYRGMSQSYYNSREFSLVSQSLSEYNPPHMSYLPTSMRSYSLPSGLNDDAGGPMPSSDNTECQVWVQPGDLNGLKGQLIRLLELSGGCLPLVRVPAEYQKVYSKPLFISEYGAFKLVDLFKKMDDAISVEGKGARRFVYLRNKKGGASAPPLTLAKKDKKGKGALEENANGVLGGCSSDELSDEERVVLEEHDGRSFTGKRNKGRAGRCQIDGRVLEQFKCELQEILVSYSCRILLSCFEAVYKQRYKKQLEYQQFGVDKLEDLLEKVSDVVIMHEEPVSKRKFLSAVGFQ 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03894 531 MobiDBLite consensus disorder prediction 1 26 - -
Vivi5g03894 531 CDD LOTUS 311 380 - -
Vivi5g03894 531 CDD LOTUS 456 518 - -
Vivi5g03894 531 ProSiteProfiles OST-type HTH domain profile. 455 529 IPR025605 -
Vivi5g03894 531 Pfam OST-HTH/LOTUS domain 312 377 IPR025605 -
Vivi5g03894 531 Pfam OST-HTH/LOTUS domain 455 518 IPR025605 -
Vivi5g03894 531 CDD PIN_limkain_b1_N_like 47 173 - -
Vivi5g03894 531 Gene3D - 47 192 - -
Vivi5g03894 531 ProSiteProfiles OST-type HTH domain profile. 310 384 IPR025605 -
Vivi5g03894 531 Gene3D - 310 379 IPR041966 -
Vivi5g03894 531 Gene3D - 452 522 IPR041966 -
Vivi5g03894 531 PANTHER LIMKAIN B LKAP 26 494 IPR024768 GO:0005777|GO:0010468
Vivi5g03894 531 Pfam NYN domain 48 187 IPR021139 GO:0004540
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03894 Vivi-Chr5 134287939 134291224 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03894 44 198 C2H2 Transcription Factor Family AT5G61190 43.226 7.07e-30 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03894 - - gmx:100818186 865.914