Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03886 ATGCGTGGCTCTTTACAACCGTTGGATTTAGGGATTCAGATTCCCTACCACTTCAGATGCCCAATCTCATTAGAGCTTATGAGAGACCCTGTTACCGTCTCCACCGGTCAGACCTACGACCGTAACAGCATCGAGTCGTGGGTTAACACCGGCAACACCACGTGTCCGGTCACTAGGGTTAACCTCACCGATTTCACGTTCATTCCTAATCACACTCTTCGCCGTTTGATTCAAGAATGGTGCGTTGCGAACCGCGCTTTTGGTGTTCAGCGTATTCCAACTCCCAAACAGCCCGCAGATTCTGCTCTTGTTCGTTCCTTGCTTAACCAGTGTTCTTCCCATTCTGTACCTACGCAAATGAGACTTAACTCGCTTCGTCGACTCAGGACACTCGCTCGTGACTCGGATTATAACCGTTCTTTGATTGGTTCTCTCAATGTTCGTCATGTTTTGTTACCTATTGTTTTCGACTACAACGGTTTAGATGAGATGAAAAACGAGTCACTCGCTTTGCTTGTTCTATTCCCACTCAGTGAGGCAGAATGTGCTTTAGTTGCGGAAGATTCTGATAAGATAAACTACCTAACGAGTCTTCTTTCACATTCTTTGTTCGATGTCCGGGTCAACTCAGCGGCGCTTATTGAGATCGTCGTCGCGGGAACTCACTCGGCGGAGATAAGATCTCAGGTGAGCAATGTTGACGGGATCTACGACGGCGTGGTTGAGATACTCAAAAATCCGATCTCGTATCCGCGTGCGCTTAAGATTGGAATCAAGGCCTTATTCGCTCTCTGCCTTGTGAAACAGACGCGTCACCGTGCTGTCCTCGCCGGTGCGCCCGCGGTGCTGGTTGACAGGCTTGCTGACTTCGAGAAGTGTGACGCGGAGAGAGCATTAGCGACGGTGGAGTTGTTGTGCCGTGTACCTGATGGTTGTGCGGCTTTCGCTTCTCACGCGCTTACAGTTCCGATGCTTGTGAAGATAATACTCAAGATTTCGGATCGTGCGACGGAGTACGCTGCCGGAGCGCTCATGGCGCTGTGTTCGGAATCGGAACGGTGCCAGCGAGAAGCGGTTACGGCGGGGGTTCTGACTCAGCTTTTACTTCTGGTGCAAAGTGATTGCACGGAGAGGGCGAAGAGGAAGGCGCAACTGTTGCTGAAGCTACTTCGAGATTCGTGGCCTCAAGATTCCGTCGGAAATTCTGACGATTTTGCATGCAGTCATTTTGACTGA 1236 0.5049 MRGSLQPLDLGIQIPYHFRCPISLELMRDPVTVSTGQTYDRNSIESWVNTGNTTCPVTRVNLTDFTFIPNHTLRRLIQEWCVANRAFGVQRIPTPKQPADSALVRSLLNQCSSHSVPTQMRLNSLRRLRTLARDSDYNRSLIGSLNVRHVLLPIVFDYNGLDEMKNESLALLVLFPLSEAECALVAEDSDKINYLTSLLSHSLFDVRVNSAALIEIVVAGTHSAEIRSQVSNVDGIYDGVVEILKNPISYPRALKIGIKALFALCLVKQTRHRAVLAGAPAVLVDRLADFEKCDAERALATVELLCRVPDGCAAFASHALTVPMLVKIILKISDRATEYAAGALMALCSESERCQREAVTAGVLTQLLLLVQSDCTERAKRKAQLLLKLLRDSWPQDSVGNSDDFACSHFD 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03886 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 90 IPR013083 -
Vivi5g03886 411 PANTHER WDSAM1 PROTEIN 12 396 IPR045185 GO:0061630
Vivi5g03886 411 SUPERFAMILY ARM repeat 103 390 IPR016024 -
Vivi5g03886 411 SMART Ubox_2 17 80 IPR003613 GO:0004842|GO:0016567
Vivi5g03886 411 SUPERFAMILY RING/U-box 12 89 - -
Vivi5g03886 411 Gene3D - 91 399 IPR011989 -
Vivi5g03886 411 CDD RING-Ubox_PUB 15 67 IPR045210 -
Vivi5g03886 411 ProSiteProfiles U-box domain profile. 13 87 IPR003613 GO:0004842|GO:0016567
Vivi5g03886 411 FunFam RING-type E3 ubiquitin transferase 8 90 - -
Vivi5g03886 411 Pfam U-box domain 14 85 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03886 Vivi-Chr5 134011454 134013127 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03886 1 405 U-box Gene Family AT1G49780 65.375 0.0 523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03886 - - var:108341190 660.603