Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03881 ATGCTATATACTTCAGTTTTACGGCCAATGTGTCATCCGCAGGTTATATGTCAAAGGAGGACTATTGGGTCCTTCCCGGCAATTGTTAGCAAGATGCCAGGTCCTAGTTCTAACGGCACTGATATGAATCATCAGTCTTCCTTGAATCATGTGCAGAATTCAGTAGATTTTCGACTGTCAGATTACAGGGGGTCTTCTGGTGAGACTGCATGTTTACGTGGTAGTGGTCCTAATGTGACCTTTAATGGCTGGAATACCGGTGAACACAGTTCTGGACTGAATCTGATCAACCAAGTCAATGATGATGCTCTAATATCAGAACATAGATTGTCTTCTTCATGTAGTGCTATTGCCGAGGATGGTCAGAGACCTGAAGAAAGGCAATTACTTGGGAACCAATCCAGAATTCATCCTTCCTTTTTGCAAGGTTCCAGCTCTAATCATACAGCTCAGAATATTAATCTCGGTATGGGGCACATTGGCAACTCTTCTGACCGTGGGAAAGGAAAAGAAACTGGTAGTGGTGGGAATAGCACCAATCCAGGTGGATTAGATAGAGAGAAGATAATACTTGGCAGCTCGTCATTCAATCACACAGGAGCTTCGTCTGCAAGCTCTGGATACATGGCATGGGGAGATAGCAGTAGTTCAAGTTCTTCTTTAGCTAATTGGGGTCCTTCCTGCAAGAGAAAGACCCTTGAAGGTAGTTCTATGCAACTATGTACCGGGGGAAGTTCGAGTTCTCTTGTACAAACTGAAAATGGTTACTGGCCTGCTGATTCTGTTGATCTTAATGTTCCTGGAAGCTTAGGTGATCTGTCACCTTTAGACGATTTTCGTGTTACTAGCCCTCCATTTCAGCAGAATACAAGAAATGAAGCTTCTAATATGTTCCCTTCAGTGATAGGTGTAGCGGAAAATGTGGAAAGGCCTCTAAGAAACTTTGATAGGAGAATAACCCATTTACAGCATCCGGAATCTGTACCTCTCAATTTAACATCAACTGGGAGTGCTAGACATCAGAATTATCCTTCTCCACATCAAACACCTGGCTCTCTCTCATTTAGCGAGTCCTTGGATTTGAGGTTAACAGCTGGAGTAACAGCTGCTAATTCTGTTGTGCCACAAACCCAGTCACCTTCCCTACACATGCATCCTTTTCCGTGGAATAGAGGTGCTAATCATAGAGTGGCCAGATCATCAAGTTCTTATAACTCGGGAGAAAGAGCAGTACGCGAAGATTTTAACTTAAGAATCTTCCCAAGAGATGGTACTGAGCATCCCATGAATTTGCCTGCATCTTCAGGACATGAACCTGCAGGTTGGTATACATCTTCTAATAATGTGAACAACGCCGGAGGTATACCTCCTCCATCCTGGATTGGATCTAGTTCAAATGTCCACTCGTTACCTAATCCTAGCTGGACTTTTAACCATGAAGTCCCAACAGAAAATCTACAGAGAGTTTCAGAGTTCAGTCCTTGGTCCCTTTTTCCATCAATCAGCTCAGCATCTGGGGCTCATAATGGCCATTCCCCCTCTACTTCCGGCCCTCTTTCTTTTTCTCAGGGTTCTAGCAGCAGTCAACCACATCCAAGAACATCATATTTGATGGAAAGAAGGGGGGATGTACTCCCTGCTCCTCATTCACTGCGAACATTACCCGCTGACAATGAGGGAAGACGCCGGCTCATATCTGAGATTCGCCAAGTCTTGATTGCAATGCGGAGGGGTGAGAGCTTACGAGCTGAGGATTATATGCTCTTTGACCCTTTCCTATATCATGGCATGGCTGAAATGCACGACAGACACAGAGAAATGCGTCTTGATGTTGATAACATGTCATATGAGGAATTGTTGGCACTGGGGGAGCGTATAGGAGACGTAAGCACTGGACTGAACGAAGATATAATTCACAAGTTGATGAAGCAGCGATTTTACACATCTCTGATGACCGAGTCTTCTTCTGATCTTGAACCTTGCTGTATCTGTCAGGAGGAATATACTGATGGACAGAAAATTGGTTCGCTGGATTGTGGGCATGAGTTTCACACTAACTGCATCAAGCAGTGGCTAATGCAGAAGAATATGTGTCCAATTTGCAAAACAACAGCCTTGGCCACGTGA 2127 0.4433 MLYTSVLRPMCHPQVICQRRTIGSFPAIVSKMPGPSSNGTDMNHQSSLNHVQNSVDFRLSDYRGSSGETACLRGSGPNVTFNGWNTGEHSSGLNLINQVNDDALISEHRLSSSCSAIAEDGQRPEERQLLGNQSRIHPSFLQGSSSNHTAQNINLGMGHIGNSSDRGKGKETGSGGNSTNPGGLDREKIILGSSSFNHTGASSASSGYMAWGDSSSSSSSLANWGPSCKRKTLEGSSMQLCTGGSSSSLVQTENGYWPADSVDLNVPGSLGDLSPLDDFRVTSPPFQQNTRNEASNMFPSVIGVAENVERPLRNFDRRITHLQHPESVPLNLTSTGSARHQNYPSPHQTPGSLSFSESLDLRLTAGVTAANSVVPQTQSPSLHMHPFPWNRGANHRVARSSSSYNSGERAVREDFNLRIFPRDGTEHPMNLPASSGHEPAGWYTSSNNVNNAGGIPPPSWIGSSSNVHSLPNPSWTFNHEVPTENLQRVSEFSPWSLFPSISSASGAHNGHSPSTSGPLSFSQGSSSSQPHPRTSYLMERRGDVLPAPHSLRTLPADNEGRRRLISEIRQVLIAMRRGESLRAEDYMLFDPFLYHGMAEMHDRHREMRLDVDNMSYEELLALGERIGDVSTGLNEDIIHKLMKQRFYTSLMTESSSDLEPCCICQEEYTDGQKIGSLDCGHEFHTNCIKQWLMQKNMCPICKTTALAT 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03881 708 MobiDBLite consensus disorder prediction 137 159 - -
Vivi5g03881 708 MobiDBLite consensus disorder prediction 333 353 - -
Vivi5g03881 708 MobiDBLite consensus disorder prediction 137 187 - -
Vivi5g03881 708 ProSiteProfiles Zinc finger RING-type profile. 661 702 IPR001841 -
Vivi5g03881 708 SUPERFAMILY RING/U-box 647 705 - -
Vivi5g03881 708 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 625 706 IPR013083 -
Vivi5g03881 708 MobiDBLite consensus disorder prediction 167 181 - -
Vivi5g03881 708 FunFam E3 ubiquitin-protein ligase MBR2 628 706 - -
Vivi5g03881 708 Pfam Ring finger domain 661 702 IPR001841 -
Vivi5g03881 708 MobiDBLite consensus disorder prediction 503 534 - -
Vivi5g03881 708 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 174 706 IPR045191 GO:0061630
Vivi5g03881 708 SMART ring_2 661 701 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03881 Vivi-Chr5 133840644 133850793 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03881 20 708 C3H Transcription Factor Family AT2G15530 36.228 3.28e-105 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03881 - K19041 gmx:100809024 1023.08