Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03880 ATGCAAGGTCAAAGGAGGACTATTGGGTCCTTCCCGGCAATTGTTAGCAAGATGCCAGGTCCTAGTTCTAACGGCACTGATATGAATCATCAGTCTTCCTTGAATCATGTGCAGAATTCAGTAGATTTTCGACTGTCAGATTACAGGGGGTCTTCTGGTGAGACTGCATGTTTACGTGGTAGTGGTCCTAATGTGACCTTTAATGGCTGGAATACCGGTGAACACAGTTCTGGACTGAATCTGATCAACCAAGTCAATGATGATGCTCTAATATCAGAACATAGATTGTCTTCTTCATGTAGTGCTATTGCCGAGGATGGTCAGAGACCTGAAGAAAGGCAATTACTTGGGAACCAATCCAGAATTCATCCTTCCTTTTTGCAAGGTTCCAGCTCTAATCATACAGCTCAGAATATTAATCTCGGTATGGGGCACATTGGCAACTCTTCTGACCGTGGGAAAGGAAAAGAAACTGGTAGTGGTGGGAATAGCACCAATCCAGGTGGATTAGATAGAGAGAAGATAATACTTGGCAGCTCGTCATTCAATCACACAGGAGCTTCGTCTGCAAGCTCTGGATACATGGCATGGGGAGATAGCAGTAGTTCAAGTTCTTCTTTAGCTAATTGGGGTCCTTCCTGCAAGAGAAAGACCCTTGAAGGTAGTTCTATGCAACTATGTACCGGGGGAAGTTCGAGTTCTCTTGTACAAACTGAAAATGGTTACTGGCCTGCTGATTCTGTTGATCTTAATGTTCCTGGAAGCTTAGGTGATCTGTCACCTTTAGACGATTTTCGTGTTACTAGCCCTCCATTTCAGCAGAATACAAGAAATGAAGCTTCTAATATGTTCCCTTCAGTGATAGGTGTAGCGGAAAATGTGGAAAGGCCTCTAAGAAACTTTGATAGGAGAATAACCCATTTACAGCATCCGGAATCTGTACCTCTCAATTTAACATCAACTGGGAGTGCTAGACATCAGAATTATCCTTCTCCACATCAAACACCTGGCTCTCTCTCATTTAGCGAGTCCTTGGATTTGAGGTTAACAGCTGGAGTAACAGCTGCTAATTCTGTTGTGCCACAAACCCAGTCACCTTCCCTACACATGCATCCTTTTCCGTGGAATAGAGGTGCTAATCATAGAGTGGCCAGATCATCAAGTTCTTATAACTCGGGAGAAAGAGCAGTACGCGAAGATTTTAACTTAAGAATCTTCCCAAGAGATGGTACTGAGCATCCCATGAATTTGCCTGCATCTTCAGGACATGAACCTGCAGGTTGGTATACATCTTCTAATAATGTGAACAACGCCGGAGGTATACCTCCTCCATCCTGGATTGGATCTAGTTCAAATGTCCACTCGTTACCTAATCCTAGCTGGACTTTTAACCATGAAGTCCCAACAGAAAATCTACAGAGAGTTTCAGAGTTCAGTCCTTGGTCCCTTTTTCCATCAATCAGCTCAGCATCTGGGGCTCATAATGGCCATTCCCCCTCTACTTCCGGCCCTCTTTCTTTTTCTCAGGGTTCTAGCAGCAGTCAACCACATCCAAGAACATCATATTTGATGGAAAGAAGGGGGGATGTACTCCCTGCTCCTCATTCACTGCGAACATTACCCGCTGACAATGAGGGAAGACGCCGGCTCATATCTGAGATTCGCCAAGTCTTGATTGCAATGCGGAGGGGTGAGAGCTTACGAGCTGAGGATTATATGCTCTTTGACCCTTTCCTATATCATGGCATGGCTGAAATGCACGACAGACACAGAGAAATGCGTCTTGATGTTGATAACATGTCATATGAGGAATTGTTGGCACTGGGGGAGCGTATAGGAGACGTAAGCACTGGACTGAACGAAGATATAATTCACAAGTTGATGAAGCAGCGATTTTACACATCTCTGATGACCGAGTCTTCTTCTGATCTTGAACCTTGCTGTATCTGTCAGGAGGAATATACTGATGGACAGAAAATTGGTTCGCTGGATTGTGGGCATGAGTTTCACACTAACTGCATCAAGCAGTGGCTAATGCAGAAGAATATGTGTCCAATTTGCAAAACAACAGCCTTGGCCACGTGA 2085 0.4446 MQGQRRTIGSFPAIVSKMPGPSSNGTDMNHQSSLNHVQNSVDFRLSDYRGSSGETACLRGSGPNVTFNGWNTGEHSSGLNLINQVNDDALISEHRLSSSCSAIAEDGQRPEERQLLGNQSRIHPSFLQGSSSNHTAQNINLGMGHIGNSSDRGKGKETGSGGNSTNPGGLDREKIILGSSSFNHTGASSASSGYMAWGDSSSSSSSLANWGPSCKRKTLEGSSMQLCTGGSSSSLVQTENGYWPADSVDLNVPGSLGDLSPLDDFRVTSPPFQQNTRNEASNMFPSVIGVAENVERPLRNFDRRITHLQHPESVPLNLTSTGSARHQNYPSPHQTPGSLSFSESLDLRLTAGVTAANSVVPQTQSPSLHMHPFPWNRGANHRVARSSSSYNSGERAVREDFNLRIFPRDGTEHPMNLPASSGHEPAGWYTSSNNVNNAGGIPPPSWIGSSSNVHSLPNPSWTFNHEVPTENLQRVSEFSPWSLFPSISSASGAHNGHSPSTSGPLSFSQGSSSSQPHPRTSYLMERRGDVLPAPHSLRTLPADNEGRRRLISEIRQVLIAMRRGESLRAEDYMLFDPFLYHGMAEMHDRHREMRLDVDNMSYEELLALGERIGDVSTGLNEDIIHKLMKQRFYTSLMTESSSDLEPCCICQEEYTDGQKIGSLDCGHEFHTNCIKQWLMQKNMCPICKTTALAT 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03880 694 MobiDBLite consensus disorder prediction 123 145 - -
Vivi5g03880 694 FunFam E3 ubiquitin-protein ligase MBR2 614 692 - -
Vivi5g03880 694 MobiDBLite consensus disorder prediction 153 167 - -
Vivi5g03880 694 MobiDBLite consensus disorder prediction 320 339 - -
Vivi5g03880 694 SMART ring_2 647 687 IPR001841 -
Vivi5g03880 694 Pfam Ring finger domain 647 688 IPR001841 -
Vivi5g03880 694 MobiDBLite consensus disorder prediction 123 173 - -
Vivi5g03880 694 SUPERFAMILY RING/U-box 633 691 - -
Vivi5g03880 694 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 161 692 IPR045191 GO:0061630
Vivi5g03880 694 MobiDBLite consensus disorder prediction 489 520 - -
Vivi5g03880 694 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 611 692 IPR013083 -
Vivi5g03880 694 MobiDBLite consensus disorder prediction 1 30 - -
Vivi5g03880 694 ProSiteProfiles Zinc finger RING-type profile. 647 688 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03880 Vivi-Chr5 133840401 133850793 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03880 1 694 C3H Transcription Factor Family AT2G15530 36.388 6.53e-106 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03880 - K19041 gmx:100809024 1029.24