Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03879 ATGCCAGGTCCTAGTTCTAACGGCACTGATATGAATCATCAGTCTTCCTTGAATCATGTGCAGAATTCAGTAGATTTTCGACTGTCAGATTACAGGGGGTCTTCTGGTGAGACTGCATGTTTACGTGGTAGTGGTCCTAATGTGACCTTTAATGGCTGGAATACCGGTGAACACAGTTCTGGACTGAATCTGATCAACCAAGTCAATGATGATGCTCTAATATCAGAACATAGATTGTCTTCTTCATGTAGTGCTATTGCCGAGGATGGTCAGAGACCTGAAGAAAGGCAATTACTTGGGAACCAATCCAGAATTCATCCTTCCTTTTTGCAAGGTTCCAGCTCTAATCATACAGCTCAGAATATTAATCTCGGTATGGGGCACATTGGCAACTCTTCTGACCGTGGGAAAGGAAAAGAAACTGGTAGTGGTGGGAATAGCACCAATCCAGGTGGATTAGATAGAGAGAAGATAATACTTGGCAGCTCGTCATTCAATCACACAGGAGCTTCGTCTGCAAGCTCTGGATACATGGCATGGGGAGATAGCAGTAGTTCAAGTTCTTCTTTAGCTAATTGGGGTCCTTCCTGCAAGAGAAAGACCCTTGAAGGTAGTTCTATGCAACTATGTACCGGGGGAAGTTCGAGTTCTCTTGTACAAACTGAAAATGGTTACTGGCCTGCTGATTCTGTTGATCTTAATGTTCCTGGAAGCTTAGGTGATCTGTCACCTTTAGACGATTTTCGTGTTACTAGCCCTCCATTTCAGCAGAATACAAGAAATGAAGCTTCTAATATGTTCCCTTCAGTGATAGGTGTAGCGGAAAATGTGGAAAGGCCTCTAAGAAACTTTGATAGGAGAATAACCCATTTACAGCATCCGGAATCTGTACCTCTCAATTTAACATCAACTGGGAGTGCTAGACATCAGAATTATCCTTCTCCACATCAAACACCTGGCTCTCTCTCATTTAGCGAGTCCTTGGATTTGAGGTTAACAGCTGGAGTAACAGCTGCTAATTCTGTTGTGCCACAAACCCAGTCACCTTCCCTACACATGCATCCTTTTCCGTGGAATAGAGGTGCTAATCATAGAGTGGCCAGATCATCAAGTTCTTATAACTCGGGAGAAAGAGCAGTACGCGAAGATTTTAACTTAAGAATCTTCCCAAGAGATGGTACTGAGCATCCCATGAATTTGCCTGCATCTTCAGGACATGAACCTGCAGGTTGGTATACATCTTCTAATAATGTGAACAACGCCGGAGGTATACCTCCTCCATCCTGGATTGGATCTAGTTCAAATGTCCACTCGTTACCTAATCCTAGCTGGACTTTTAACCATGAAGTCCCAACAGAAAATCTACAGAGAGTTTCAGAGTTCAGTCCTTGGTCCCTTTTTCCATCAATCAGCTCAGCATCTGGGGCTCATAATGGCCATTCCCCCTCTACTTCCGGCCCTCTTTCTTTTTCTCAGGGTTCTAGCAGCAGTCAACCACATCCAAGAACATCATATTTGATGGAAAGAAGGGGGGATGTACTCCCTGCTCCTCATTCACTGCGAACATTACCCGCTGACAATGAGGGAAGACGCCGGCTCATATCTGAGATTCGCCAAGTCTTGATTGCAATGCGGAGGGGTGAGAGCTTACGAGCTGAGGATTATATGCTCTTTGACCCTTTCCTATATCATGGCATGGCTGAAATGCACGACAGACACAGAGAAATGCGTCTTGATGTTGATAACATGTCATATGAGGAATTGTTGGCACTGGGGGAGCGTATAGGAGACGTAAGCACTGGACTGAACGAAGATATAATTCACAAGTTGATGAAGCAGCGATTTTACACATCTCTGATGACCGAGTCTTCTTCTGATCTTGAACCTTGCTGTATCTGTCAGGAGGAATATACTGATGGACAGAAAATTGGTTCGCTGGATTGTGGGCATGAGTTTCACACTAACTGCATCAAGCAGTGGCTAATGCAGAAGAATATGTGTCCAATTTGCAAAACAACAGCCTTGGCCACGTGA 2034 0.4435 MPGPSSNGTDMNHQSSLNHVQNSVDFRLSDYRGSSGETACLRGSGPNVTFNGWNTGEHSSGLNLINQVNDDALISEHRLSSSCSAIAEDGQRPEERQLLGNQSRIHPSFLQGSSSNHTAQNINLGMGHIGNSSDRGKGKETGSGGNSTNPGGLDREKIILGSSSFNHTGASSASSGYMAWGDSSSSSSSLANWGPSCKRKTLEGSSMQLCTGGSSSSLVQTENGYWPADSVDLNVPGSLGDLSPLDDFRVTSPPFQQNTRNEASNMFPSVIGVAENVERPLRNFDRRITHLQHPESVPLNLTSTGSARHQNYPSPHQTPGSLSFSESLDLRLTAGVTAANSVVPQTQSPSLHMHPFPWNRGANHRVARSSSSYNSGERAVREDFNLRIFPRDGTEHPMNLPASSGHEPAGWYTSSNNVNNAGGIPPPSWIGSSSNVHSLPNPSWTFNHEVPTENLQRVSEFSPWSLFPSISSASGAHNGHSPSTSGPLSFSQGSSSSQPHPRTSYLMERRGDVLPAPHSLRTLPADNEGRRRLISEIRQVLIAMRRGESLRAEDYMLFDPFLYHGMAEMHDRHREMRLDVDNMSYEELLALGERIGDVSTGLNEDIIHKLMKQRFYTSLMTESSSDLEPCCICQEEYTDGQKIGSLDCGHEFHTNCIKQWLMQKNMCPICKTTALAT 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03879 677 MobiDBLite consensus disorder prediction 136 150 - -
Vivi5g03879 677 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 594 675 IPR013083 -
Vivi5g03879 677 FunFam E3 ubiquitin-protein ligase MBR2 597 675 - -
Vivi5g03879 677 ProSiteProfiles Zinc finger RING-type profile. 630 671 IPR001841 -
Vivi5g03879 677 MobiDBLite consensus disorder prediction 117 156 - -
Vivi5g03879 677 SUPERFAMILY RING/U-box 616 674 - -
Vivi5g03879 677 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 146 675 IPR045191 GO:0061630
Vivi5g03879 677 SMART ring_2 630 670 IPR001841 -
Vivi5g03879 677 MobiDBLite consensus disorder prediction 472 503 - -
Vivi5g03879 677 MobiDBLite consensus disorder prediction 302 322 - -
Vivi5g03879 677 Pfam Ring finger domain 630 671 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03879 Vivi-Chr5 133840399 133850793 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03879 53 677 C3H Transcription Factor Family AT2G15530 37.351 8.48e-106 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03879 - K19041 gmx:100809024 999.193