Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03878 ATGGCAACCAACGAGGAATCTGGAAGACACCAAGAGGTTGGTCACAAGAGTCTTCTCCAAAGTGATGCTCTATATCAGTATATTCTAGAGACCAGTGTTTTCCCAAGAGAACATGAAGCCATGAAAGAATTGAGAGAGGTCACAGCAAAACACCCATGGAACATCATGACAACCTCTGCAGACGAAGGACAATTTTTGAGCATGCTCCTTAAACTCATCAATGCCAAAAACACCATGGAAATCGGTGTCTACACTGGCTACTCCCTCCTTGCCACTGCCCTCGCCATTCCTGAAGATGGAAAGATTTTGGCTATGGACATTAACAAGGAGAATTACGAACTGGGTCTTCCTGTGATAAAAAAAGCTGGTGTTGAACACAAAATTGATTTCAGAGAAGGTCCTGCTCTACCAGTTCTTGATGAATTGGTTAAAGATGAAAAGAATCATGGGAGTTACGATTTCATTTTTGTGGATGCCGACAAGGACAATTACATCAACTACCATAAGAGATTGATTGACCTTGTGAAAGTGGGAGGTGTGATCGGGTACGACAACACCCTATGGAATGGATCTGTGGTGGCACCTCCTGATGCTCCTCTCAGGAAGTATGTTAGGTATTACAGGGATTTTGTTTTGGAGCTTAACAAGGCATTGGCTGTGGACCCTAGGATTGAAATCTGTATGCTTCCGGTTGGTGATGGAATCACTATCTGCCGTCGGATCAAGTGA 729 0.4376 MATNEESGRHQEVGHKSLLQSDALYQYILETSVFPREHEAMKELREVTAKHPWNIMTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVEHKIDFREGPALPVLDELVKDEKNHGSYDFIFVDADKDNYINYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDGITICRRIK 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03878 242 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 21 240 IPR029063 -
Vivi5g03878 242 Gene3D Vaccinia Virus protein VP39 16 242 IPR029063 -
Vivi5g03878 242 FunFam Caffeoyl-CoA O-methyltransferase 1 10 242 - -
Vivi5g03878 242 Pfam O-methyltransferase 31 241 IPR002935 GO:0008171
Vivi5g03878 242 ProSiteProfiles SAM-dependent O-methyltransferase class I-type profile. 17 241 IPR002935 GO:0008171
Vivi5g03878 242 PANTHER O-METHYLTRANSFERASE-RELATED 15 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03878 Vivi-Chr5 133802386 133803719 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03878 9 241 Monolignol Biosynthesis Gene Families AT4G34050 91.845 6.19e-166 458
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03878 K00588 - gmx:100811247 462.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g03878 5 133802386 133803719 Vivi1g02845 1 61928983 61931217 ECH
Vivi5g03878 5 133802386 133803719 Vivi5g03878 5 133802386 133803719 ECH
Vivi5g03878 5 133802386 133803719 Vivi1g02845 1 61928983 61931217 PCT