Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03868 ATGGCTCAGGTTCAGGTTCAGCCTCAGAATGCGATGACGGGTCCTAACGGTGGTGCCGCGGCGGCGGCGGCTGCGGCTGCGGCTGGTGGGAATCAGTTTGTGACGACTTCGCTTTACGTTGGAGATCTTGATGTCAATGTTACGGATTCTCAGCTTTATGACCTTTTTAATCAATTGGGTCAGGTTGTGTCTGTTAGGGTTTGCAGGGATTTGACCACTAGGAGGTCGCTTGGTTATGGTTATGTTAACTACAGTAACCCTCAAGATGCTGCCAGAGCATTGGATGTTCTGAACTTCACTCCTCTGAACAACAGGCCCATTCGTATTATGTATTCACACCGTGATCCCAGTATCCGCAAAAGTGGTCAAGGAAATATTTTTATTAAGAATTTGGACAAGGCAATTGACCATAAGGCATTGCATGATACCTTTTCTACATTTGGGAGTATCCTTTCTTGCAAGGTAGCTGTGGATGGATCTGGCCAATCAAAAGGCTACGGCTTTGTTCAATTTGATAGTGAGGAGGCTGCTCAAAAAGCTATTGAAAAGCTTAATGGTATGCTGTTGAATGATAAGCAAGTTTATGTGGGACCCTTCCTTCGCAAGCAAGAGAGGGAGACTACAACTGACAGGGCAAAATTCAACAATGTTTTTGTTAAGAATCTATCTGAAACAACCACCGATGATGAGTTGAAGCAGATTTTTGGAGAATTTGGAACAATTACTAGTGCTGTAGTAATGAGGGATGGGGATGGGAAATCAAAGTGTTTTGGATTTGTAAACTTTGAGAGTACCGATGATGCTGCTAGGGCTGTTGATGCTCTTAATGGGAAGAAAATTGATGATAAGGAATGGTATGTTGGAAAAGCTCAAAAGAAATCTGAAAGGGAGCATGAACTGAAGCAAAAATTTGAGCAGAGCATGAAGGAAGCTGCTGATAAGTATCAAGGGGCAAACTTGTATGTCAAAAATTTGGACGACAGCATTGTTGATGACAAACTTAAGGAGCTGTTCTCCTCTTATGGCACAATTACCTCTTGCAAGGTAATGAGAGACCCCAATGGCATAAGTCGAGGATCTGGGTTTGTTGCATTCTCTACTCCTGAGGAGGCATCTAGAGCACTGTTGGAGATGAATGGCAAAATGGTGGTAAGCAAGCCTCTGTATGTGACTCTGGCCCAGCGGAAGGAAGATAGAAGAGCTAGGCTGCAGGCACAATTTGCTCAAATGCGTCCTGTTGCGATGCCCCCATCTGTTGCTCCCCGTATGCCTATGTATCCCCCTGGTGGTCCAGGTATGGGTCAACAAATATTTTATGGTCAAGGCCCTCCTGCCATCATTCCTTCCCAGCCTGGATTTGGGTATCAACAACAACTTGTGCCTGGAATGAGGCCTGGCGGGGGTCCTGTGCCAAATTTCTTTGTCCCAATGGTTCAGCAGGGACAGCAAGGGCAGCGTCCTGGTGGAAGACGTGGAGGTGCAGTCCAGCAGTCCCAGCAGCCAGTTCCTCTTATGCCACAGCAGATGCTTCCTAGGGGGCGTATGTATCGTTATCCTTCTGGTAGGGGCATGCCTGATGGTCCCATGCCTGGAGTTGCCGGAGGCATGTATTCTGTTCCTTATGATGTGGGTGGGATGCCCCTTCGTGATGCATCACTTTCACAGCAAATTCCCATTGGTGCTTTGGCTTCTCATCTGGCTAATGCATCTCCAGAGCAGCAGAGGACGATGCTGGGTGAGAATCTTTACCCACTTGTGGAACAGTTGGAGCCTGACAATGCTGCCAAAGTTACTGGCATGCTTCTGGAGATGGACCAGACTGAAGTTTTGCACTTGCTTGAGTCACCAGAAGCCCTGAAGGCCAAGGTGGCAGAGGCAATGGACGTCCTTAGGAATGTTGCACAGCAGCAGGCTGGAGGCGCTGCTGATCAGCTGTCTTCATTGTCACTTAATGACAGCCTTGTTTCTTAA 1971 0.4734 MAQVQVQPQNAMTGPNGGAAAAAAAAAAGGNQFVTTSLYVGDLDVNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNNRPIRIMYSHRDPSIRKSGQGNIFIKNLDKAIDHKALHDTFSTFGSILSCKVAVDGSGQSKGYGFVQFDSEEAAQKAIEKLNGMLLNDKQVYVGPFLRKQERETTTDRAKFNNVFVKNLSETTTDDELKQIFGEFGTITSAVVMRDGDGKSKCFGFVNFESTDDAARAVDALNGKKIDDKEWYVGKAQKKSEREHELKQKFEQSMKEAADKYQGANLYVKNLDDSIVDDKLKELFSSYGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPVAMPPSVAPRMPMYPPGGPGMGQQIFYGQGPPAIIPSQPGFGYQQQLVPGMRPGGGPVPNFFVPMVQQGQQGQRPGGRRGGAVQQSQQPVPLMPQQMLPRGRMYRYPSGRGMPDGPMPGVAGGMYSVPYDVGGMPLRDASLSQQIPIGALASHLANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNVAQQQAGGAADQLSSLSLNDSLVS 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03868 656 Gene3D - 554 637 - -
Vivi5g03868 656 Gene3D - 300 407 IPR012677 -
Vivi5g03868 656 Gene3D - 198 299 IPR012677 -
Vivi5g03868 656 SMART rrm1_1 125 197 IPR000504 GO:0003723
Vivi5g03868 656 SMART rrm1_1 216 288 IPR000504 GO:0003723
Vivi5g03868 656 SMART rrm1_1 37 110 IPR000504 GO:0003723
Vivi5g03868 656 SMART rrm1_1 319 391 IPR000504 GO:0003723
Vivi5g03868 656 CDD RRM3_I_PABPs 214 293 - -
Vivi5g03868 656 FunFam Polyadenylate-binding protein 122 205 - -
Vivi5g03868 656 Gene3D - 27 124 IPR012677 -
Vivi5g03868 656 FunFam Polyadenylate-binding protein 206 300 - -
Vivi5g03868 656 CDD RRM4_I_PABPs 317 395 - -
Vivi5g03868 656 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 558 635 IPR002004 GO:0003723
Vivi5g03868 656 PANTHER RNA BINDING PROTEIN 35 98 - -
Vivi5g03868 656 SMART rrm2_1 216 288 IPR003954 GO:0003676
Vivi5g03868 656 SMART rrm2_1 319 391 IPR003954 GO:0003676
Vivi5g03868 656 SMART rrm2_1 37 110 IPR003954 GO:0003676
Vivi5g03868 656 SMART rrm2_1 125 197 IPR003954 GO:0003676
Vivi5g03868 656 MobiDBLite consensus disorder prediction 480 500 - -
Vivi5g03868 656 CDD RRM2_I_PABPs 122 198 IPR045305 -
Vivi5g03868 656 CDD RRM1_I_PABPs 37 116 IPR034364 -
Vivi5g03868 656 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
Vivi5g03868 656 Gene3D - 125 197 IPR012677 -
Vivi5g03868 656 SMART poly_2 570 633 IPR002004 GO:0003723
Vivi5g03868 656 SUPERFAMILY RNA-binding domain, RBD 215 398 IPR035979 GO:0003676
Vivi5g03868 656 FunFam Polyadenylate-binding protein 554 636 - -
Vivi5g03868 656 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 108 IPR000504 GO:0003723
Vivi5g03868 656 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 217 285 IPR000504 GO:0003723
Vivi5g03868 656 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 320 388 IPR000504 GO:0003723
Vivi5g03868 656 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 126 194 IPR000504 GO:0003723
Vivi5g03868 656 FunFam Polyadenylate-binding protein 301 406 - -
Vivi5g03868 656 Pfam Poly-adenylate binding protein, unique domain 566 630 IPR002004 GO:0003723
Vivi5g03868 656 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 318 395 IPR000504 GO:0003723
Vivi5g03868 656 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 124 196 IPR000504 GO:0003723
Vivi5g03868 656 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 37 631 IPR006515 GO:0003723
Vivi5g03868 656 SUPERFAMILY PABC (PABP) domain 499 648 IPR036053 GO:0003723
Vivi5g03868 656 FunFam Polyadenylate-binding protein 22 121 - -
Vivi5g03868 656 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 215 292 IPR000504 GO:0003723
Vivi5g03868 656 SUPERFAMILY RNA-binding domain, RBD 36 205 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03868 Vivi-Chr5 133572508 133578131 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03868 35 655 Eukaryotic Initiation Factors Gene Family AT1G49760 76.228 0.0 936
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03868 K13126 - gmx:100813735 1118.61