LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi5g03861	ATGATTAACTTGCCGCGTTTTAAGATTAGTGGTAGTTTGAGTCCTTCTGTTGCGAATTTAGGTTCTTTGGTTGATATTAGATTGGAGGGTAATCATATAAATGGTGTTGTGCCTAGTAATTGGACTAGTTTGATGAATCTGAAGTTGTTGGATCTGAGTGATAATGATATTTCTCCTCCTTTGCCGGTTTTTAGAAATGGGTTGAAACCTATGGTTGATGGGAATTCTTTGTTGAATGGTGGTGGAGCGAAAGGTCCTTCCTCTGGGAAAAACAGTACGTCGGGTGGATCGGGGAGTACGAGTGATGATACGAAGGGAGGGTCGGATTCAAGTTTGAGTGATTCGGTTGAAACGAAGAAATCCAAAAGGAAAAACGTGGTTTTGATTGTAGCTCCCATTGCTGGTGTTGCGGCTGCTGCTTTTCTGTTGATTCCGCTTTACGCGTATTGTTTTAGAAGGACAAAGGATGGATTTCAGGCTCCGAGTTCACTTGTGGTTCACCCGAGAGATCCGTCTGATTCGGACAGTGCTGTAAAGATAGCTGTTGTTAATAATACCAACGGAAGTGTTTCCACTTTGACAGGGAGCAGGACAGGGAGTAGAAACAGCAGCGCGTTTGGGGAGTCTCATGTCATTGAAGCTGGAAATCTTGTGATATCGGTTCAAGTTCTAAGAAACGTGACGAAGAATTTCACCCCTGAGAATGAGCTCGGTCGCGGTGGATTTGGAGTTGTTTATAAGGGAGAGTTGGACGACGGGACTAAGATTGCAGTAAAAAGAATGGAAGCAGGTGTGATAACCAATAAAGCCTTGGATGAATTTCAAGCTGAAATCGCAGTTCTGTCGAAAGTTCGACATCGACATCTAGTGGCCCTTATAGGTTATTCCATGGAAGGTAACGAGAGGATTCTAGTGTATGAGTATATGCCACAAGGCGCTCTCAGTCAGCATCTTTTCCATTGGAAAAGCCTCGGACTCGAGCCTCTCTCGTGGAAGAGGAGACTCAACATTGCCTTGGATGTTGCTAGAGGAATGGAGTATCTTCATACTCTGGCTCAACAGAGCTTCATTCACAGGGATCTTAAGTCCTCAAATATTTTACTCGCTGATGATTTTAGAGCTAAAGTCTTGGATTTCGGATTGGTAAAACTCGCACCTAATGGCGAAAAATCTGTAGTGACTAAACTTGCTGGGACTTTTGGATACTTGGCTCCTGAATATGCAGTGACAGGAAAAATCACAACCAAAGTAGATGTTTTCAGTTTCGGCGTCGTGTTAATGGAGCTGTTGTCTGGATTGATGGCACTCGACGAGGATAGACCCGAGGAAAGCCAATACTTAGCAGCATGGTTCTGGAATATAAAATCCGATAAGAATAAACTAATGGCTGCAATTGACCCAACTCTCGAAATAACCGACGAAACATTCGAGAGCGTCTCAATTATCGCAGAGCTAGCCGGCCACTGCACAGCTAGAGAACCAAACCAAAGGCCAGAAATGGGCCATGCTGTCAACGTCCTCGCACCACTCGTTGAAAAATGGAAACCGTTTGACGACGACCCCGACGAGTATTCCGGCATCGACTATAGTCTTCCACTTAACCAAATGGTGAAGGGTTGGCAGGAGGCGGAAGGAAAAGACACAAGTTATATGGACTTAGAAGACAGTAAGAGTAGTATCCCCGCGAGACCTACTGGATTTGCGGATTCTTTTACTTCGGCGGATGGCCGGTGA	1734	0.4487	MINLPRFKISGSLSPSVANLGSLVDIRLEGNHINGVVPSNWTSLMNLKLLDLSDNDISPPLPVFRNGLKPMVDGNSLLNGGGAKGPSSGKNSTSGGSGSTSDDTKGGSDSSLSDSVETKKSKRKNVVLIVAPIAGVAAAAFLLIPLYAYCFRRTKDGFQAPSSLVVHPRDPSDSDSAVKIAVVNNTNGSVSTLTGSRTGSRNSSAFGESHVIEAGNLVISVQVLRNVTKNFTPENELGRGGFGVVYKGELDDGTKIAVKRMEAGVITNKALDEFQAEIAVLSKVRHRHLVALIGYSMEGNERILVYEYMPQGALSQHLFHWKSLGLEPLSWKRRLNIALDVARGMEYLHTLAQQSFIHRDLKSSNILLADDFRAKVLDFGLVKLAPNGEKSVVTKLAGTFGYLAPEYAVTGKITTKVDVFSFGVVLMELLSGLMALDEDRPEESQYLAAWFWNIKSDKNKLMAAIDPTLEITDETFESVSIIAELAGHCTAREPNQRPEMGHAVNVLAPLVEKWKPFDDDPDEYSGIDYSLPLNQMVKGWQEAEGKDTSYMDLEDSKSSIPARPTGFADSFTSADGR	577

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi5g03861	577	PANTHER	OSJNBA0070M12.3 PROTEIN	1	577	-	-
	Vivi5g03861	577	Pfam	Protein kinase domain	233	505	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi5g03861	577	FunFam	receptor protein kinase TMK1	309	526	-	-
	Vivi5g03861	577	SUPERFAMILY	L domain-like	2	65	-	-
	Vivi5g03861	577	SUPERFAMILY	Protein kinase-like (PK-like)	209	507	IPR011009	-
	Vivi5g03861	577	MobiDBLite	consensus disorder prediction	547	577	-	-
	Vivi5g03861	577	MobiDBLite	consensus disorder prediction	75	117	-	-
	Vivi5g03861	577	ProSiteProfiles	Protein kinase domain profile.	231	511	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi5g03861	577	Gene3D	Phosphorylase Kinase; domain 1	192	308	-	-
	Vivi5g03861	577	Gene3D	Transferase(Phosphotransferase) domain 1	309	523	-	-
	Vivi5g03861	577	ProSitePatterns	Protein kinases ATP-binding region signature.	237	259	IPR017441	GO:0005524
	Vivi5g03861	577	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	356	368	IPR008271	GO:0004672\|GO:0006468
	Vivi5g03861	577	MobiDBLite	consensus disorder prediction	81	114	-	-
	Vivi5g03861	577	Gene3D	Ribonuclease Inhibitor	1	79	IPR032675	-
	Vivi5g03861	577	SMART	serkin_6	231	511	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi5g03861	577	CDD	STKc_IRAK	237	510	-	-
	Vivi5g03861	577	FunFam	Leucine-rich repeat receptor-like kinase	1	80	-	-
	Vivi5g03861	577	FunFam	receptor protein kinase TMK1	193	308	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi5g03861	Vivi-Chr5	133459519	133461639	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi5g03861	133	507	Trihelix Transcription Factor Family	AT1G70460	37.157	1.34e-72	244

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-IX	Vivi5g03861		Pkinase	1.5e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi5g03861	K00924		-	vvo:131602560	1067.76