Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03860 ATGCTGATTGTGTTAACCCTGAAGAATAGAAATGGGTTGAAACCTATGGTTGATGGGAATTCTTTGTTGAATGGTGGTGGAGCGAAAGGTCCTTCCTCTGGGAAAAACAGTACGTCGGGTGGATCGGGGAGTACGAGTGATGATACGAAGGGAGGGTCGGATTCAAGTTTGAGTGATTCGGTTGAAACGAAGAAATCCAAAAGGAAAAACGTGGTTTTGATTGTAGCTCCCATTGCTGGTGTTGCGGCTGCTGCTTTTCTGTTGATTCCGCTTTACGCGTATTGTTTTAGAAGGACAAAGGATGGATTTCAGGCTCCGAGTTCACTTGTGGTTCACCCGAGAGATCCGTCTGATTCGGACAGTGCTGTAAAGATAGCTGTTGTTAATAATACCAACGGAAGTGTTTCCACTTTGACAGGGAGCAGGACAGGGAGTAGAAACAGCAGCGCGTTTGGGGAGTCTCATGTCATTGAAGCTGGAAATCTTGTGATATCGGTTCAAGTTCTAAGAAACGTGACGAAGAATTTCACCCCTGAGAATGAGCTCGGTCGCGGTGGATTTGGAGTTGTTTATAAGGGAGAGTTGGACGACGGGACTAAGATTGCAGTAAAAAGAATGGAAGCAGGTGTGATAACCAATAAAGCCTTGGATGAATTTCAAGCTGAAATCGCAGTTCTGTCGAAAGTTCGACATCGACATCTAGTGGCCCTTATAGGTTATTCCATGGAAGGTAACGAGAGGATTCTAGTGTATGAGTATATGCCACAAGGCGCTCTCAGTCAGCATCTTTTCCATTGGAAAAGCCTCGGACTCGAGCCTCTCTCGTGGAAGAGGAGACTCAACATTGCCTTGGATGTTGCTAGAGGAATGGAGTATCTTCATACTCTGGCTCAACAGAGCTTCATTCACAGGGATCTTAAGTCCTCAAATATTTTACTCGCTGATGATTTTAGAGCTAAAGTCTTGGATTTCGGATTGGTAAAACTCGCACCTAATGGCGAAAAATCTGTAGTGACTAAACTTGCTGGGACTTTTGGATACTTGGCTCCTGAATATGCAGTGACAGGAAAAATCACAACCAAAGTAGATGTTTTCAGTTTCGGCGTCGTGTTAATGGAGCTGTTGTCTGGATTGATGGCACTCGACGAGGATAGACCCGAGGAAAGCCAATACTTAGCAGCATGGTTCTGGAATATAAAATCCGATAAGAATAAACTAATGGCTGCAATTGACCCAACTCTCGAAATAACCGACGAAACATTCGAGAGCGTCTCAATTATCGCAGAGCTAGCCGGCCACTGCACAGCTAGAGAACCAAACCAAAGGCCAGAAATGGGCCATGCTGTCAACGTCCTCGCACCACTCGTTGAAAAATGGAAACCGTTTGACGACGACCCCGACGAGTATTCCGGCATCGACTATAGTCTTCCACTTAACCAAATGGTGAAGGGTTGGCAGGAGGCGGAAGGAAAAGACACAAGTTATATGGACTTAGAAGACAGTAAGAGTAGTATCCCCGCGAGACCTACTGGATTTGCGGATTCTTTTACTTCGGCGGATGGCCGGTGA 1569 0.4576 MLIVLTLKNRNGLKPMVDGNSLLNGGGAKGPSSGKNSTSGGSGSTSDDTKGGSDSSLSDSVETKKSKRKNVVLIVAPIAGVAAAAFLLIPLYAYCFRRTKDGFQAPSSLVVHPRDPSDSDSAVKIAVVNNTNGSVSTLTGSRTGSRNSSAFGESHVIEAGNLVISVQVLRNVTKNFTPENELGRGGFGVVYKGELDDGTKIAVKRMEAGVITNKALDEFQAEIAVLSKVRHRHLVALIGYSMEGNERILVYEYMPQGALSQHLFHWKSLGLEPLSWKRRLNIALDVARGMEYLHTLAQQSFIHRDLKSSNILLADDFRAKVLDFGLVKLAPNGEKSVVTKLAGTFGYLAPEYAVTGKITTKVDVFSFGVVLMELLSGLMALDEDRPEESQYLAAWFWNIKSDKNKLMAAIDPTLEITDETFESVSIIAELAGHCTAREPNQRPEMGHAVNVLAPLVEKWKPFDDDPDEYSGIDYSLPLNQMVKGWQEAEGKDTSYMDLEDSKSSIPARPTGFADSFTSADGR 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03860 522 ProSitePatterns Serine/Threonine protein kinases active-site signature. 301 313 IPR008271 GO:0004672|GO:0006468
Vivi5g03860 522 ProSiteProfiles Protein kinase domain profile. 176 456 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g03860 522 CDD STKc_IRAK 182 455 - -
Vivi5g03860 522 ProSitePatterns Protein kinases ATP-binding region signature. 182 204 IPR017441 GO:0005524
Vivi5g03860 522 FunFam receptor protein kinase TMK1 254 471 - -
Vivi5g03860 522 MobiDBLite consensus disorder prediction 26 59 - -
Vivi5g03860 522 Pfam Protein kinase domain 178 450 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g03860 522 MobiDBLite consensus disorder prediction 16 62 - -
Vivi5g03860 522 SUPERFAMILY Protein kinase-like (PK-like) 154 452 IPR011009 -
Vivi5g03860 522 FunFam receptor protein kinase TMK1 138 253 - -
Vivi5g03860 522 Gene3D Transferase(Phosphotransferase) domain 1 254 468 - -
Vivi5g03860 522 PANTHER OSJNBA0070M12.3 PROTEIN 37 522 - -
Vivi5g03860 522 SMART serkin_6 176 456 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g03860 522 MobiDBLite consensus disorder prediction 492 522 - -
Vivi5g03860 522 Gene3D Phosphorylase Kinase; domain 1 137 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03860 Vivi-Chr5 133459155 133461639 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03860 156 460 Receptor kinase-like Gene Family AT3G58690 42.071 4.69e-73 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Vivi5g03860 Pkinase 1.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03860 K00924 - vvo:131602560 941.799