Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03857 ATGGTTTTATCAAAACATTATCATGCTTCATTTTCAATCACCTTCCTTCTTTGTCTCCACTTGGTAAATTCTCAGATCATTGATGTTCCAATCCTATCTCCAATACTATCTCCATTAGTCCCTGACGTATTAAACTTCTTAGATCAAAGACTAGAGTTAGTTTTCTCAATCATCCAAGCCTTCAAAAACACAATAACCTCAGATCCATTAGGAATAACATCAACATGGGCTGGTTCAGATATATGCAGCTACAAAGGCTTCTACTGCGATAACCCGCCAGATAATCTCTCAGCCACCACCGTTGCCTCTGTCGATTTCAACGGCTTCAACCTCGCCGCACCATCTCTCGACAACTTCATCGATCAACTACCTGACTTAGCTATCTTCCATGCAAACTCCAACAATTTCTCAGGTACCATTTCACCGAAAATCGCATCACTCAAATATCTATACGAACTCGATCTAAGTAACAACATGCTCTCCGGAACATTTCCAACCTCGATCCTAAACATGCCAACACTTTCGTTTTTAGACATTAGGTACAACATGTTCACAGGAACTGTTCCTCAACAAATCTTTGTCCAAACATTGGATGCAATTTTTCTCAATAACAATAACTTTCTTCTCACACTTCCCAACAATATAGGCGAAACAACAGCATCTTATATCACATTCGCTAACAACAAATTCTCCGGTCCAATTCCTCCTAACATAGGAAAAGCCTCAAACACATTACTCGAAGTTTTATTATTAAACAACCAGTTAACAGGTTGTCTTCCTTACGAAATAGGACTCCTCCAAAACCTCCAACTTTTTGACGCGGGTAGTAACCTTTTAACAGGCCCGTTACCGTGGTCGTTTGCGTGTTTGAAGAAGGTGGAAGAGTTAAACTTTGCTAAGAACATGTTGTATGGCCAGGTTCCAGAAGTGGTTTGCGCGTTGGAAAATTTGGCGAATTTAACCTTGTCTTATAACTATTTTAACAGATTGGGGCCATTGTGCAGAAAGCTTGTAAGAAATGGTGTGCTTGATGTGAAGAATAACTGTATTTTCGATCTTCCAGATCAAAGATCGATGGAGGAGTGTGTGAAGTTTTCTTCACTTCCCAGAACTTGTGCGCGTCCTGGAACATATAATGTTATACCGTGTCGGAGTCCAACACGGGCAAAACCACCTGGAAATAAGAGGAATTTGTTGTCATATTCTGCTCTTGAGAGAAAGAGAGTAGTACTGATTTAA 1239 0.4011 MVLSKHYHASFSITFLLCLHLVNSQIIDVPILSPILSPLVPDVLNFLDQRLELVFSIIQAFKNTITSDPLGITSTWAGSDICSYKGFYCDNPPDNLSATTVASVDFNGFNLAAPSLDNFIDQLPDLAIFHANSNNFSGTISPKIASLKYLYELDLSNNMLSGTFPTSILNMPTLSFLDIRYNMFTGTVPQQIFVQTLDAIFLNNNNFLLTLPNNIGETTASYITFANNKFSGPIPPNIGKASNTLLEVLLLNNQLTGCLPYEIGLLQNLQLFDAGSNLLTGPLPWSFACLKKVEELNFAKNMLYGQVPEVVCALENLANLTLSYNYFNRLGPLCRKLVRNGVLDVKNNCIFDLPDQRSMEECVKFSSLPRTCARPGTYNVIPCRSPTRAKPPGNKRNLLSYSALERKRVVLI 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03857 412 Gene3D Ribonuclease Inhibitor 219 369 IPR032675 -
Vivi5g03857 412 SUPERFAMILY L domain-like 58 351 - -
Vivi5g03857 412 Gene3D Ribonuclease Inhibitor 56 218 IPR032675 -
Vivi5g03857 412 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 39 392 - -
Vivi5g03857 412 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 212 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03857 Vivi-Chr5 133425384 133426956 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03857 46 369 Leucine-rich Repeat extension Gene Families AT3G24480 44.444 1.34e-89 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03857 - - gmx:100813314 565.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g00894 1 19150656 19158580 Vivi5g03857 5 133425384 133426956 PCT