Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03854 ATGAGGAAACCTAGCTGTGACATCAACAAGAACAAAGGAACTTGGTCCCAAGAAGAAGACCAGAAACTCATTGATTATGTTAACAAACACGGTGACGTTTGTTGGAGTACACTGCCTCAAGCTGCAGGTTTACTTCGGTGCGGTAAGAGTTGTAGATTGAGATGGATGAACTATCTAAGGCCAGACCTTAAAAGAGGTAACTTTGCTGAAGATGAAGAAGATCTTATCATCAAGCTTCATGCACTTTTAGGCAACAGGTGGTCACTAATTGCTGGGAGATTGCCCGGACGCACTGATAATGAAGTGAAGAATTATTGGAATTCTCATATAAGAAAAAAGTTGATTAGCAAGGGTATGGATCAAAATAATCATGGTTTAAACCATAAAATGATCTCTCCCCTTCAAAACTCATTCATGTCTAATAGTTCAGAATCTTTTGGATTGAAAGAGATTAGCAAGACGAGTAAAACTCAAGTTGAGAATTATGGCGAAATCTCAAATGCTTCAAGTGGTGAAGATATTGAATCATATGCCCTATTGGATATAAACCTTGAGCTTTCTCTATGA 567 0.381 MRKPSCDINKNKGTWSQEEDQKLIDYVNKHGDVCWSTLPQAAGLLRCGKSCRLRWMNYLRPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHIRKKLISKGMDQNNHGLNHKMISPLQNSFMSNSSESFGLKEISKTSKTQVENYGEISNASSGEDIESYALLDINLELSL 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03854 188 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 60 114 IPR017930 -
Vivi5g03854 188 SMART sant 11 61 IPR001005 -
Vivi5g03854 188 SMART sant 64 112 IPR001005 -
Vivi5g03854 188 Pfam Myb-like DNA-binding domain 65 109 IPR001005 -
Vivi5g03854 188 Pfam Myb-like DNA-binding domain 12 59 IPR001005 -
Vivi5g03854 188 ProSiteProfiles Myb-like domain profile. 7 59 IPR001005 -
Vivi5g03854 188 SUPERFAMILY Homeodomain-like 9 106 IPR009057 -
Vivi5g03854 188 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 59 IPR017930 -
Vivi5g03854 188 CDD SANT 67 110 IPR001005 -
Vivi5g03854 188 FunFam MYB transcription factor 66 126 - -
Vivi5g03854 188 CDD SANT 14 59 IPR001005 -
Vivi5g03854 188 Gene3D - 66 132 - -
Vivi5g03854 188 Gene3D - 7 64 - -
Vivi5g03854 188 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 150 - -
Vivi5g03854 188 ProSiteProfiles Myb-like domain profile. 60 110 IPR001005 -
Vivi5g03854 188 FunFam MYB-related transcription factor 11 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03854 Vivi-Chr5 133344916 133346011 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03854 2 188 MYB Transcription Factor Family AT4G09460 49.510 3.25e-69 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi5g03854 Myb_DNA-binding 8.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03854 K09422 - gmx:100818783 284.648