Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03853 ATGGCCGGCGAAGTCGCCGGAGAGTTCACCGGAGATAACACACCGGAGCTTCTGTGTTTGGTTCATGATATTACCGGAATGTGTGCCGGAGGTGGTGGAGGTGGAGGCGATTCTTCTTCGGTTACCGCTGATGTGATGTTCAGAAAAGACTGTACAGATCTGGTGCGGCGGATCTCTCTGCTTACTTATTTGTTTGAGGAAATTAGGGAGTTGAATAAGGTGAATTGTTCAGGTTCGAGTTCTTCAGGTACTGTTTCTGATTCGGAGGATTCGTGGTCCTCTGATCTAGTGGTTGTTCTTCAATCTGCTAAACGATTGTTATCTGTAGCGAAGAATTTTAGCTCTAATGGCTCTTCTGATGAAGCTGCAAAGACGATTATCTTCCAATTTCAGTGTGTGACGTGGAAATTGGAAAAACTATTGAGCAGTTTACCCTATGATGATTTAGACATCTCAGAGGAAGTCAAAGAACAGGTGGATTTGGTGAGAACACAGTTGAGACGAGCCACGGATAAATATGGGTTTATGATTTCTAAAATGCCGTCTGATGACTTATCCAAGCCCCTGCCTCAAGAAATCAATCAAGTATTTGGCAAATCTTTGAGTGGATTGCATAAACAGAACAGTTGTCCTGAAAATCTATCAGAACTAGGTAGCATTCCTAAAAGCAATGAAGGGAAAAGCTGCAGTGCACATGGGGCAGGATCTCGATTGGAAAGAACAAGGAGCATCCATGCCTCTTATGAAGTTTCTTTATCGAATATAACTGCACCTGAAAGTCAAGAAATTTCTCGGAGCAAGAATCTACCTGAAGTTAAAAAGCCTGAAGCAATTGTAATTCCTGAAGATTTTCTTTGCCCTATTTCATTGGAACTTATGAGAGATCCTGTTATTGTGGCTACTGGTCAGACATATGAGAGATCTTATATACAGAGATGGATTGATTGTGGAAATACAACGTGTCCAAAAACTCAGCAGAAGCTCCAACATTTGACCCTTACACCAAATTATGTTCTAAGGAGCCTTGTTTCTCAGTGGTGTATAGATCATAACATTGAGCAACCAACGGGACTAACCAATGGAAAAATAAAAAAGAGTGATGGATCGTTCAGAGATGTTACAGGTGACATAGCAGCAATTGAAGCTCTGGTCCGGAAGCTCTCCTGCAGGTCCGTTGACGAGTGTAGAGCAGCTGTTGCTGAAATTCGTTCACTATCCAAAAGAAGCACCGACAATAGGATACTAATTGCTGAAGTTGGAGCAATTCCAATTCTGGTCAACCTTTTAACTTCAGAAGATGTAATGACACAAGAAAACGCGGTTACTTCAATTCTCAACCTTTCTATATATGAAAACAACAAAGGACTTATAATGCTTGCTGGTGCAATTCCATCCATTGTCCAAGTCCTCCGAGCTGGAACCATGGAAGCAAGAGAAAACGCGGCAGCAACTCTTTTTAGCTTGTCACTTGCGGACGAGAACAAAATAATAATTGGAGCCTCTGGAGCTATATCAGCTTTGGTAGAATTGCTCCAAAACGGAAGCCCTCGAGGGAAGAAGGATGCAGCAACAGCATTGTTCAATTTATGTATATATCAAGGGAACAAGGGCAGAGCCATAAGGGCAGGAATCATCACAGCACTGCTGAAGATGCTCACAGATTCAAGCAAATCAATGGTTGACGAAGCTCTAACAATAATGTCAGTTCTTGCCAGCCACCAAGAGGCCAAGGTTTCCATCGTAAAAGCCAGCACTATACCAGTTTTAATAGATCTTTTGAGAACCGGATTGCCCCGCAACAAAGAGAATGCAGCTGCCATTTTACTTGCTCTGTGCAAGAGGGATACTGATAATTTTTCCTGTATAAGTCGACTTGGTGCTGTTATCCCTCTGACCGAACTTGCTCGAACTGGTACAGAGAGAGCCAAACGGAAGGCTACTTCATTACTCGAGCATCTTCGTAAGTTACAACAGCTTTGA 1980 0.4263 MAGEVAGEFTGDNTPELLCLVHDITGMCAGGGGGGGDSSSVTADVMFRKDCTDLVRRISLLTYLFEEIRELNKVNCSGSSSSGTVSDSEDSWSSDLVVVLQSAKRLLSVAKNFSSNGSSDEAAKTIIFQFQCVTWKLEKLLSSLPYDDLDISEEVKEQVDLVRTQLRRATDKYGFMISKMPSDDLSKPLPQEINQVFGKSLSGLHKQNSCPENLSELGSIPKSNEGKSCSAHGAGSRLERTRSIHASYEVSLSNITAPESQEISRSKNLPEVKKPEAIVIPEDFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNTTCPKTQQKLQHLTLTPNYVLRSLVSQWCIDHNIEQPTGLTNGKIKKSDGSFRDVTGDIAAIEALVRKLSCRSVDECRAAVAEIRSLSKRSTDNRILIAEVGAIPILVNLLTSEDVMTQENAVTSILNLSIYENNKGLIMLAGAIPSIVQVLRAGTMEARENAAATLFSLSLADENKIIIGASGAISALVELLQNGSPRGKKDAATALFNLCIYQGNKGRAIRAGIITALLKMLTDSSKSMVDEALTIMSVLASHQEAKVSIVKASTIPVLIDLLRTGLPRNKENAAAILLALCKRDTDNFSCISRLGAVIPLTELARTGTERAKRKATSLLEHLRKLQQL 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03853 659 PANTHER U BOX DOMAIN-CONTAINING 46 655 - -
Vivi5g03853 659 SUPERFAMILY ARM repeat 379 653 IPR016024 -
Vivi5g03853 659 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 461 503 IPR000225 GO:0005515
Vivi5g03853 659 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 353 IPR013083 -
Vivi5g03853 659 SMART arm_5 450 490 IPR000225 GO:0005515
Vivi5g03853 659 SMART arm_5 532 572 IPR000225 GO:0005515
Vivi5g03853 659 SMART arm_5 409 449 IPR000225 GO:0005515
Vivi5g03853 659 SMART arm_5 491 531 IPR000225 GO:0005515
Vivi5g03853 659 SMART arm_5 573 613 IPR000225 GO:0005515
Vivi5g03853 659 Gene3D - 362 454 IPR011989 -
Vivi5g03853 659 Gene3D - 455 558 IPR011989 -
Vivi5g03853 659 FunFam RING-type E3 ubiquitin transferase 559 658 - -
Vivi5g03853 659 FunFam RING-type E3 ubiquitin transferase 279 354 - -
Vivi5g03853 659 Coils Coil 152 172 - -
Vivi5g03853 659 MobiDBLite consensus disorder prediction 217 236 - -
Vivi5g03853 659 Pfam Armadillo/beta-catenin-like repeat 492 530 IPR000225 GO:0005515
Vivi5g03853 659 Pfam Armadillo/beta-catenin-like repeat 410 448 IPR000225 GO:0005515
Vivi5g03853 659 Pfam U-box domain 280 350 IPR003613 GO:0004842|GO:0016567
Vivi5g03853 659 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Vivi5g03853 659 FunFam RING-type E3 ubiquitin transferase 358 558 - -
Vivi5g03853 659 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 420 462 IPR000225 GO:0005515
Vivi5g03853 659 SUPERFAMILY RING/U-box 279 354 - -
Vivi5g03853 659 Coils Coil 639 659 - -
Vivi5g03853 659 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 502 544 IPR000225 GO:0005515
Vivi5g03853 659 Gene3D - 559 658 IPR011989 -
Vivi5g03853 659 CDD RING-Ubox_PUB 281 333 IPR045210 -
Vivi5g03853 659 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03853 Vivi-Chr5 133302386 133305660 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03853 46 658 U-box Gene Family AT1G23030 62.866 0.0 724
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03853 - - gmx:100815448 1044.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g03853 5 133302386 133305660 Vivi5g03853 5 133302386 133305660 ECH