Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03840 ATGGCTTCCCAAGCAAAACAAGTTTTCTATGTTATCGACCCGTCAAATATATCGGGGAAATGGTCAACCGTTCTCCCAGGAAAACACATTCCTATTAGTGATGAAATTCTTGATATTCCGTCCACACCTTCTTACACAACACAAGTTCCTACCTCATATGATGAAGTTGATGGAGATGTTGTCCATGCTATTCAAATCGATTATAAAGAAGAAAAAGATTTAAACAGGACACTCGCGGAAGAATTCAGGCGAAATCAATCTGAAATTTTAAGAAATCAAAATACTCGATCTAGCATGAATCATGAAAGACAAGAAGTCAGAATTCTCATAAGGAATCAACATGAAATTATAAGAAATCAAAATGCTCGAGCTAGCATGAATCATGATAGACGAGGAGCCGGAGTTGAAGTTTCGTTTAATAGAAGAGCAGAGAATGCTAGACGTGTGATAAAAGAGCTTCCAGTCCTTAAAACTTTTAAAGGAGATGATGGAACTGCGAACTGTCCGATTTGCATGGAAGAATTTAAAAAAGGAGAGTTGATTCAACCTTTTGGTTTGTGTGCTCATGAATTTCATTCATCATGTCTCAATTCTTGGTTACATGGAGGGAAAACAACTTGTCCAATTTGTCGCCAAGATTTGTTAAGTAATGTATGA 657 0.3683 MASQAKQVFYVIDPSNISGKWSTVLPGKHIPISDEILDIPSTPSYTTQVPTSYDEVDGDVVHAIQIDYKEEKDLNRTLAEEFRRNQSEILRNQNTRSSMNHERQEVRILIRNQHEIIRNQNARASMNHDRRGAGVEVSFNRRAENARRVIKELPVLKTFKGDDGTANCPICMEEFKKGELIQPFGLCAHEFHSSCLNSWLHGGKTTCPICRQDLLSNV 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03840 218 Pfam Ring finger domain 167 211 IPR001841 -
Vivi5g03840 218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 216 IPR013083 -
Vivi5g03840 218 SUPERFAMILY RING/U-box 149 215 - -
Vivi5g03840 218 ProSiteProfiles Zinc finger RING-type profile. 168 211 IPR001841 -
Vivi5g03840 218 SMART ring_2 168 210 IPR001841 -
Vivi5g03840 218 CDD RING-H2_RNF103 168 217 - -
Vivi5g03840 218 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 83 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03840 Vivi-Chr5 132994403 132999983 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03840 147 215 C3H Transcription Factor Family AT1G76410 38.356 2.60e-10 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03840 - K16281 vvo:131605469 446.047