Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03832 ATGGAAAAAGATTCAACCACCCTCTTCGTCAACACCTTTGTTTTCTTCTTATGCTTCTCATTCTCAGATTCTTCATCATCATTCCCCAAAGAAGCACTTCCCACCAAAACAGGTTACCTACCAGTAAGTCCCACCTCCAATTCCTCCATTTTCTACACTTTCTATGAAGCCCAAAACTCAACCTCACCTCTCTCCCAAACTCCACTTCTCATCTGGCTTCAAGGTGGCCCTGGCTGCTCCTCCATGATCGCCAACTTCTACGAACTCGGACCCTATCGTGTCACCAAATCACTCACCCTTCAACCCAACCATGGTTCTTGGAACAGAATCTTTGGTCTTCTTTTTCTCGATAGTCCAATTGGAACTGGCTTCAGTGTAGCCTCAACAACACAAGAGATTCCAACCGATCAAACCGGAGTTGCAAAACACCTTTTCGCTGCTATAACAAGGTTTGTTCAACTTGATCCTGTTTTCAAACATCGTCCTATTTATATCACCGGTGAAAGCTATGCTGGAAAATATGTTCCTGCGATTGGATACTACATATTGGAGAAAAACGCTGAGTTGAAAGACTCTGAGAGAGTGAATTTAGCTGGTTTGGCGATTGGCGATGGATTAACAGACCCGGTAACACAAGTTGTTACTCATGCTGCTAATGCTTATTACGTTGGATTAATCAACGAGAAGCAAAAGAATGAGTTGGAGAAAGCTCAACTTGAAGCAGTTAGATTGGTTGAAAGAGGGAATTGGAGTGAGGCAACTGATGCGAGAAACAATGCGTTGAGTTGGTTGAGTAGCATGACAGGGTTGGCTACTTTGTATGATTACTCAAGGAAAGTTCCTTATGAAGATGACTTGGTTGAAAAGTTCTTGAACATTGCTGAAGTGAAGAAGGCTTTAGGAGTGAACGTCGATGAATCGTTTGTTTATGAGATATGCAGTGATGTTGTTGGTGATGTATTGCAGGCTGATGTGATGAAGAGTGTGAAGTTTATGGTGGAGAAGTTGTTGAAAGAGGGGACTAGGGTGTTGTTGTATCAAGGACAGCGTGATTTGAGAGATGGTGTGGTTCAAGTTGAGGCTTGGGTGAAGACTATGAAATGGGAAGGGATTGATGAGTTTTTGACTGCGGAGAGAGAGATTTGGAAGGTGAATGGAGATTTAGCTGGTTATGTGCAGAAATGGAAGACTCTTAGTAATGTTGTTGTTTTGGGGGCTGGACATCTTTTGCCTACTGATCAACCTTTGAATTCTCAAGCTATGATTGAAGATTGGGTTTTGGAAAAGGGTTTGTTTGGAAGTGGGTTGTATCCAAATGTGTCCACAAATTCTGTACATGATGATGTCTAA 1350 0.4237 MEKDSTTLFVNTFVFFLCFSFSDSSSSFPKEALPTKTGYLPVSPTSNSSIFYTFYEAQNSTSPLSQTPLLIWLQGGPGCSSMIANFYELGPYRVTKSLTLQPNHGSWNRIFGLLFLDSPIGTGFSVASTTQEIPTDQTGVAKHLFAAITRFVQLDPVFKHRPIYITGESYAGKYVPAIGYYILEKNAELKDSERVNLAGLAIGDGLTDPVTQVVTHAANAYYVGLINEKQKNELEKAQLEAVRLVERGNWSEATDARNNALSWLSSMTGLATLYDYSRKVPYEDDLVEKFLNIAEVKKALGVNVDESFVYEICSDVVGDVLQADVMKSVKFMVEKLLKEGTRVLLYQGQRDLRDGVVQVEAWVKTMKWEGIDEFLTAEREIWKVNGDLAGYVQKWKTLSNVVVLGAGHLLPTDQPLNSQAMIEDWVLEKGLFGSGLYPNVSTNSVHDDV 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03832 449 ProSitePatterns Serine carboxypeptidases, serine active site. 165 172 IPR018202 GO:0004185
Vivi5g03832 449 Gene3D alpha/beta hydrolase 21 431 IPR029058 -
Vivi5g03832 449 PRINTS Carboxypeptidase C serine protease (S10) family signature 398 411 IPR001563 GO:0004185|GO:0006508
Vivi5g03832 449 PRINTS Carboxypeptidase C serine protease (S10) family signature 116 126 IPR001563 GO:0004185|GO:0006508
Vivi5g03832 449 PRINTS Carboxypeptidase C serine protease (S10) family signature 103 115 IPR001563 GO:0004185|GO:0006508
Vivi5g03832 449 PRINTS Carboxypeptidase C serine protease (S10) family signature 151 176 IPR001563 GO:0004185|GO:0006508
Vivi5g03832 449 SUPERFAMILY alpha/beta-Hydrolases 34 427 IPR029058 -
Vivi5g03832 449 Pfam Serine carboxypeptidase 33 426 IPR001563 GO:0004185|GO:0006508
Vivi5g03832 449 FunFam Carboxypeptidase 20 433 - -
Vivi5g03832 449 Coils Coil 227 247 - -
Vivi5g03832 449 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 36 415 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03832 Vivi-Chr5 132704995 132706474 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03832 286 426 Calmodulin-binding Proteins AT2G22960 21.127 2.38e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03832 K09645 - gmx:100777309 693.345