Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03825 ATGATATATCCTTTGCTGCTTCTCTCTTCTGTTTCCTATTTTGTTTGCTTCAATTTACCTTTTTCCTCTCTTTTCATCAAGGGATCTTCTTCTTCTTCTTCTATGGCAGTTTTACCTACAAGTTCCTCCAGCTTAGAATTGACCATATCTGTCCCAGGTTTTGCTTCTTCACCAATCACTCTTCTCACCTCATCATCATCTGCAAAAAAGTTGGACATGAACCAAGTAGCCATAGAAGAAGAATGGATGAGATTAGAAGAGGAAGAAGAAAGCAACGCTAATCCTCGCAAAAAACTCCGGCTTACAAAGGAACAGTCTCGTCTCCTTGAAGAAAGCTTTAGAAAAAACCACACTTTAAACCCAAAGCAGAAAGAGTGTTTGGCAATGCAGCTGAAACTCCGACCAAGACAAGTGGAGGTGTGGTTTCAAAACCGTAGGGCCAGGAGCAAGTTGAAGCAGACAGAGATGGAGTGCGAGTACATGAAGAGGTGGTTTGGATCTTTGAGAGAGCAGAACAGGAGGCTTCAAAGAGAAGTTGAGGAACTTAGGGCTATGAAAGTGGGTCCACCAACTGTGTTATCCCCTCACAGTTCCGAACCACTTCCAGCTTCAACGTTATCCATGTGTCCCCGATGTAAACGTGTTACCACCAACGTAACCGCCGTTATCGCCACCGACAAAAATGCCACCGCCGCCGTCACTTTGTCTCCTAAAGTGGCAACACTTTCTACGCAGTTGCGTCAAATTTGA 750 0.444 MIYPLLLLSSVSYFVCFNLPFSSLFIKGSSSSSSMAVLPTSSSSLELTISVPGFASSPITLLTSSSSAKKLDMNQVAIEEEWMRLEEEEESNANPRKKLRLTKEQSRLLEESFRKNHTLNPKQKECLAMQLKLRPRQVEVWFQNRRARSKLKQTEMECEYMKRWFGSLREQNRRLQREVEELRAMKVGPPTVLSPHSSEPLPASTLSMCPRCKRVTTNVTAVIATDKNATAAVTLSPKVATLSTQLRQI 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03825 249 ProSitePatterns 'Homeobox' domain signature. 127 150 IPR017970 GO:0000981|GO:0006355
Vivi5g03825 249 FunFam Homeobox-leucine zipper protein 18 82 157 - -
Vivi5g03825 249 SMART HOX_1 94 156 IPR001356 GO:0003677
Vivi5g03825 249 Pfam Homeodomain 96 150 IPR001356 GO:0003677
Vivi5g03825 249 SUPERFAMILY Homeodomain-like 93 161 IPR009057 -
Vivi5g03825 249 Coils Coil 165 185 - -
Vivi5g03825 249 SMART halz 152 195 IPR003106 GO:0006355|GO:0043565
Vivi5g03825 249 CDD homeodomain 95 153 IPR001356 GO:0003677
Vivi5g03825 249 Gene3D - 88 159 - -
Vivi5g03825 249 ProSiteProfiles 'Homeobox' domain profile. 92 152 IPR001356 GO:0003677
Vivi5g03825 249 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 56 232 - -
Vivi5g03825 249 Pfam Homeobox associated leucine zipper 152 186 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03825 Vivi-Chr5 132678519 132682365 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03825 69 229 Homeobox Transcription Factor Family AT1G70920 58.235 3.43e-55 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vivi5g03825 Homeodomain 6.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03825 K09338 - gmx:100778684 303.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g03825 5 132678519 132682365 Vivi5g03825 5 132678519 132682365 ECH