Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03824 ATGACTAGAAAAAAAGTGAAACTCGCATTCATAACCAACGATTCTTCGAGGAAAGCGACATTCAAGAAAAGGAAGAAAGGCCTAATGAAAAAGGTTAGTGAACTTAGCACCCTTTGTGGAATCGATGCGTGTGCTATAATCTATAGTCCGTATGATCCTCAACCAGAGGTTTGGCCATCTCAACCTGGAGTCCAAAGGGTGCTCAACAAGTTTAGAAGAATGCCTGAATTGGAACAAAGCAAAAAGATGGTTAATCAAGAGAGTTTTCTAAAACAAAGGATCGAAAAGGCGAAAGATCACTTGACGAAACAAAGGAAAGATAATAGAGAAAAAGAAATGACGCAACTCATGTTTCAATATCTTAGTGGAGGTAATGTAATGAATAATATAAGTATGGCTGATTTAAATGACATGGCATGGTTGATTGATCAATATTTGAAAGAGATTAATAGAAGAGTTGAAATGTTGACCAAGAATTCTCAAGGTCAAGGTCAAGGCCAAATGATGGCACAACCATTACCAATGGTGGCTAATGGAGTGCCTAAGGTTGAAGAGGTGGGACAAGGGAGTCATAATGGTCAAGGGTTGGTGGATATGAATATGAATGTTAATGTTATGCAAAAGCAACCTTGGTTTATGAATTTGATGGATGGAAATGGTGGAAATGATGGTGCACCTCCTTTGGGAAATGTTTCTCAACAAAATGGATTTTGGCCAAATCCATTTTTCCAATGA 735 0.3796 MTRKKVKLAFITNDSSRKATFKKRKKGLMKKVSELSTLCGIDACAIIYSPYDPQPEVWPSQPGVQRVLNKFRRMPELEQSKKMVNQESFLKQRIEKAKDHLTKQRKDNREKEMTQLMFQYLSGGNVMNNISMADLNDMAWLIDQYLKEINRRVEMLTKNSQGQGQGQMMAQPLPMVANGVPKVEEVGQGSHNGQGLVDMNMNVNVMQKQPWFMNLMDGNGGNDGAPPLGNVSQQNGFWPNPFFQ 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03824 244 Coils Coil 91 111 - -
Vivi5g03824 244 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Vivi5g03824 244 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi5g03824 244 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Vivi5g03824 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Vivi5g03824 244 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vivi5g03824 244 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Vivi5g03824 244 PANTHER MADS BOX PROTEIN 3 128 - -
Vivi5g03824 244 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi5g03824 244 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi5g03824 244 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03824 Vivi-Chr5 132600743 132601477 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03824 1 190 Type I MADS-box Gene Family AT5G48670 59.500 4.86e-71 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi5g03824 SRF-TF 3.7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03824 - - gmx:100813231 347.821