Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03820 ATGTCTGATCATGAGATCACAAAAATGGAAGAAGGTGACCTTAAGGCACCAAAATCACAAAAGGATTTAGGGTTTTTTAGTTCTCCTGAGGTAGTTCAAACCATACAAAAGGTAATAGCTGAGGTGATAGGAACATACTTCTTAATATTTGCAGGGTGTTGTGCAGTGGTTCTGAATAAAGTGGGAGAGAGTAAAGGAACAATAACATTCCCCGGAATTGCTATTGTATGGGGTCTATCGGTTATGATCTTGGTTTATTCTCTCGGTCACATCTCGGGTGCTCATTTTAATCCGGCCGTCACCATTAGCTTCGCTGTCTATCGTCAGTTTCCACTCAAACAGGTGCCGATGTATATGGTTGCACAATTGCTAGGATCTATCCTTGCTAGTGGAACATTGTGCCTTCTTTTTGACATAGATGAAAAGTCGTTTTTCGGAACAATACCAGCTGGATCTCATGGACAATCTCTTGCTTTCGAGATAATCGCATCATTTTTATTGATGTTTGTTATATCTGCGGTTTCCACAGACAATAGAGCAATCGGAGAATTAGCAGGGATCGCGGTTGGTATGACAATCATGGTGGACGTTTTCATGGCCGGGCCTGTCTCGGGTGCATCCATGAACCCAGCAAGAAGCATTGGACCTGCATTGGTGATGCACAATTACCATGGAATATGGGTTTATATAATTGGACCCTTTGCTGGTACCTTTTTAGGTTCATCAGCCTACAACTTGATTAGATTCACTGATAAACCACTAAGTGAATTAAGTCGAAGCTCAAGCTTCCTCAAAAGTGTATCAAGATCAAGAGCAAGCTTTCAGTAG 828 0.4179 MSDHEITKMEEGDLKAPKSQKDLGFFSSPEVVQTIQKVIAEVIGTYFLIFAGCCAVVLNKVGESKGTITFPGIAIVWGLSVMILVYSLGHISGAHFNPAVTISFAVYRQFPLKQVPMYMVAQLLGSILASGTLCLLFDIDEKSFFGTIPAGSHGQSLAFEIIASFLLMFVISAVSTDNRAIGELAGIAVGMTIMVDVFMAGPVSGASMNPARSIGPALVMHNYHGIWVYIIGPFAGTFLGSSAYNLIRFTDKPLSELSRSSSFLKSVSRSRASFQ 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03820 275 PRINTS Major intrinsic protein family signature 159 177 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi5g03820 275 PRINTS Major intrinsic protein family signature 190 212 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi5g03820 275 PRINTS Major intrinsic protein family signature 36 55 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi5g03820 275 PRINTS Major intrinsic protein family signature 227 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi5g03820 275 PRINTS Major intrinsic protein family signature 77 101 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi5g03820 275 PRINTS Major intrinsic protein family signature 114 133 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi5g03820 275 Pfam Major intrinsic protein 32 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi5g03820 275 NCBIfam MIP family channel protein 40 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi5g03820 275 CDD MIP 36 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi5g03820 275 SUPERFAMILY Aquaporin-like 33 254 IPR023271 -
Vivi5g03820 275 ProSitePatterns MIP family signature. 95 103 IPR022357 -
Vivi5g03820 275 PANTHER AQUAPORIN NIP2-1 16 264 IPR034294 -
Vivi5g03820 275 Gene3D Glycerol uptake facilitator protein. 3 258 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03820 Vivi-Chr5 132438983 132440574 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03820 1 269 Major Intrinsic Protein MIP AT5G37820 61.338 6.04e-120 344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03820 K09874 - jre:109002537 360.918