Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03812 ATGGATGATGAAGTTGTTCAGCGAGTCTTCCATGAAGGAGGACGCGATTACTTCCAACAACAGCCTTCAACTTCTTCCTCTTCCTCTTCCATCCTTCAATCTCTCCCGCTCCATGTGTCTTTTGATCATGGATATTATTTGTTGGTAAAATCTATTCAAGAACTGCGAGAGAAAAAAGATGGCCTTGTTACAGTTGGCATTGGTGGTCCAAGCGGTTCTGGTAAAACAAGCTTAACAGAGAAGGTGACGTCTGTTATTGGATGTACTGTTATATCAATGGAGAATTATTGTGATGGAGGTGATGAAGGAAATGTTCTGGATTCTATAGATTTTGTTACCCTTATCAAGAATCTCGAGGATTTGACAAAAGGCAAGGATACATTAATTCCAGAGTTTGATTATCAGCAAAAGAGACGCATAGGCTATAAAAAAATAATGAGTACTTCATCTGGAGTGGTAATAGTTGATGGTACATATGCATTGCACGCAAAACTGCGTTCTTTACTGGATATTCGAGTTGCAGTGGTTGGTGGTGTTCATTTTAGCCTACTTTCTAAAGTTCGCTATGACATAGGAGATTCTTGTTCACTGGATTACCTTATAGATAGCATTTTTCCATTATTTAGGAAGCACATTGAGCCAGATCTTCATCATGCACAGATCAGAATTAACAACAGCTTTGTGTCATCATTTAGAGAGGCAATCTACAAGGTTAAATGCAGAAGCAAGTCTTCAGATGGATATCCAGGTTCTTCCTCACAAGGAAATCAAGCTCAAACAGATAATTTTATTGAAATGTACCTTAGACCACCTTCGGCGAGTGAAGAAGCAGGGATAAATGATTGGATTAAAGTGCGGCAGTCTGGAATTAGGTATTATTTATCCCTTGGTGACCAGAGGATTGTTGACAAGAATTTCATTATCAGGCCAAAAGCTGAGTTTGAGGTTGGACGAATGACATTGGGTGGGTTGCTGGCTCTTGGGTACATTGTTGTGGTTAGTTATAAACGCGCATCCACAACTATCAATTATGGCAAGGTTTCAATGTCGTTTGAAACCATTGATGTTCTTGGCGAGACATTCTTGGTCACGAGAGGAACCGATAGGAAGACTGTTGGAACAGAAGCATTGAAGATGGGTATCAATGGACCTTGGATTACTAAATCATACCTTGAAATGATTCTTGAGAGAAAAGGTGTACCCCGTCTTAGTACGCCACCACTTGTGTCTAATACAACTGTGACTGGCAGTCAAGAAACAACAATTGTTGCACCAAAGCCAATTCGTGTTATCCCTAACCTTGTTACTGGCCCCGAGGATTTATCTCAGCCATGGACCCGTTCCCCAACAAAATCAAAAATAGAACCTTTTGTGGCTACATGGCGTTTCATGTCTTCAGATTCCTCCCATATTGACCACACAGTCCTAGACTTCTCTCATGAAGCAACCACAGATCCCTCACCTTTCAGGGACACCATTAGGCTTGCTCCCATGCCCGATTCATATGACCTGGACAGGGGATTGCTTTTGGCAGTTCAAGCTATACAAGCTTTGTTGGAGAATAAAGGTGTTCCAGTCATTGTTGGAATTGGTGGTCCAAGTGGGTGTGGGAAGACAAGTTTGGCTCATAAAATGGCAAATATCATTGGTTGTGAAATAATTTCCCTAGAAAGTTATTACAAACAAGTAAAGGATTTTAAATATGATGATTTCAACTCACTTGATTTATCTTTGCTCTCAAAGAATATTGATGACATAAGAAATGGACGAAGAACAAAAGTACCTATATTTGACTTAGAAAGTGGTGCTCGGAGTGGCTTCAAGGAACTTGAAGTTTCTGAAGATTGTGGAGTGATTATATTTGAAGGCGTCTATGCGTTGCATCCGGATATTCGAATGTCACTTGACTTGTGGATTGCTGTTGTAGGAGGCGTTCATTCACATTTGATTTCACGTGTTCAAAGGGATAAGAGTAGAGTTGGATGTTTTATTTCCCAAAATGAGATCATGATGACTGTGTTTCCTATGTTCCAACAACTTATTGAACCCCATCTTGTTCATGCACATCTGAAAATTCGAAACGACTTTGACCCTGTGCTTTCTCCCGAGAGTTCACTGTTTGTATTGAAGAGTAACAAAAAAGTGGCATATCAAGATATTCTATCCATTCTTGATCCAGCAAAATTTTGCAGTTCAGTTCAGAAATTTATCGATATTTACATGAGGCTTCCTGGGATCCCTTCTAATGGTCAACTGACAGATAGTGATTGTATTCGGGTTAGAATATGTGAAGGCAGATTTGCGTTACTGATACGTGAGCCTATCAGAGAAGGAAACTTCATCATTCAGCCTAAAGTGGATTTTGATATTAGCATTACTACGGTTGCCGGTCTTCTTAACCTTGGGTATCAAGCAGTTGCTTATATTGAAGCGTCCGCATTCATCTACCAGGATGGAAAGATTCTAATTGAGGTTGATCATCTACAAGATGTTCCTGGTCCATACATTCAGATAAAGGGTGTTTCTAAAGATGCTGTGGCTGCAGCAGGTTCAATGCTTAAATTGGATGGTTCGTATACTACTAAGAGTTACCTTGAAATAGTTTTGGAAAGACTACCAACAATGGAGAGAACATCTGGTGGGATTAACTTTCAGCAATCGACAAGGCTGCTAGAGATAATGGACTTTATTCAATCTCAGGGATGTAGCTCTTCTTCAGAATCCTCATCAAGCAGGGTAATCTCCCCGATTGAAGGCATTATTGAGGAGATGCAATCAAAGATTAGAAGGCTTGAAAGGTGGCTTGCGATAAATACGGTTCTGTGGACATTTCTAATGTCAGCCATTGTTGGTTATTCACTTTATCAAAGAAGGCGTCAATGA 2883 0.4013 MDDEVVQRVFHEGGRDYFQQQPSTSSSSSSILQSLPLHVSFDHGYYLLVKSIQELREKKDGLVTVGIGGPSGSGKTSLTEKVTSVIGCTVISMENYCDGGDEGNVLDSIDFVTLIKNLEDLTKGKDTLIPEFDYQQKRRIGYKKIMSTSSGVVIVDGTYALHAKLRSLLDIRVAVVGGVHFSLLSKVRYDIGDSCSLDYLIDSIFPLFRKHIEPDLHHAQIRINNSFVSSFREAIYKVKCRSKSSDGYPGSSSQGNQAQTDNFIEMYLRPPSASEEAGINDWIKVRQSGIRYYLSLGDQRIVDKNFIIRPKAEFEVGRMTLGGLLALGYIVVVSYKRASTTINYGKVSMSFETIDVLGETFLVTRGTDRKTVGTEALKMGINGPWITKSYLEMILERKGVPRLSTPPLVSNTTVTGSQETTIVAPKPIRVIPNLVTGPEDLSQPWTRSPTKSKIEPFVATWRFMSSDSSHIDHTVLDFSHEATTDPSPFRDTIRLAPMPDSYDLDRGLLLAVQAIQALLENKGVPVIVGIGGPSGCGKTSLAHKMANIIGCEIISLESYYKQVKDFKYDDFNSLDLSLLSKNIDDIRNGRRTKVPIFDLESGARSGFKELEVSEDCGVIIFEGVYALHPDIRMSLDLWIAVVGGVHSHLISRVQRDKSRVGCFISQNEIMMTVFPMFQQLIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKKVAYQDILSILDPAKFCSSVQKFIDIYMRLPGIPSNGQLTDSDCIRVRICEGRFALLIREPIREGNFIIQPKVDFDISITTVAGLLNLGYQAVAYIEASAFIYQDGKILIEVDHLQDVPGPYIQIKGVSKDAVAAAGSMLKLDGSYTTKSYLEIVLERLPTMERTSGGINFQQSTRLLEIMDFIQSQGCSSSSESSSSRVISPIEGIIEEMQSKIRRLERWLAINTVLWTFLMSAIVGYSLYQRRRQ 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03812 960 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 176 IPR027417 -
Vivi5g03812 960 CDD UMPK_like 64 226 - -
Vivi5g03812 960 Pfam Phosphoribulokinase / Uridine kinase family 527 692 IPR006083 GO:0005524|GO:0016301
Vivi5g03812 960 Pfam Phosphoribulokinase / Uridine kinase family 108 223 IPR006083 GO:0005524|GO:0016301
Vivi5g03812 960 SMART AAA_5 61 211 IPR003593 GO:0016887
Vivi5g03812 960 SMART AAA_5 524 668 IPR003593 GO:0016887
Vivi5g03812 960 SUPERFAMILY CYTH-like phosphatases 733 867 IPR033469 -
Vivi5g03812 960 CDD UMPK_like 527 695 - -
Vivi5g03812 960 PRINTS Uridine kinase signature 525 542 - -
Vivi5g03812 960 PRINTS Uridine kinase signature 552 563 - -
Vivi5g03812 960 PRINTS Uridine kinase signature 646 656 - -
Vivi5g03812 960 Gene3D - 63 243 IPR027417 -
Vivi5g03812 960 Gene3D - 524 709 IPR027417 -
Vivi5g03812 960 Gene3D - 710 872 - -
Vivi5g03812 960 PANTHER URIDINE KINASE 504 883 - -
Vivi5g03812 960 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 513 695 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03812 Vivi-Chr5 132251812 132272675 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03812 520 683 PRT Gene Family AT1G55810 24.157 9.56e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03812 - - gmx:100778905 1703.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g03812 5 132251812 132272675 Vivi5g03812 5 132251812 132272675 ECH
Vivi5g03812 5 132251812 132272675 Vivi1g01777 1 38076262 38082779 PCT