Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03808 ATGGAAACCAGTAGCGGCAACAACAGCAGTAACATGATGTGGTTTTTCAAAGACAGAGGTTTCGATGATAACATCATCCAAGGAATGTTCAAAAAATGCAAGCGCCTCGAGATGGTTCATCAAGAAAGAGCAAGTGAAAATTGGGAGTATTTGAAAAATATTGGAATTCAAGAAAGGAAACTTCCCTCAATCGTTTCAAAATGCCCGAAAATTCTCGTGCTCGGCCTCAATGAGAAGATTCTTCCCATGGTTGAATGTCTCAACACACTTGCAACAAAGCCTCATGAAGTCGCCTCTGCTATTGCCAAGTTCCCTCACATACTTTCTTATAGTGTGGAAGAGAAGCTTTGTCCGGTTTTGGCCTTTTTTCAAGCATTAGGAGTCCCCGAAAAGCAAATCGGGAAAATTCTACTGTTAAACCCTAGGCTTATTAGTTACAGTATTGAGACAAAGATGGGGGAGATTGTGAAATTTCTGGCTAGTATTGGTCTTGATAAAGACGGAATGATTGGTAAAATTTTGGTCAAGGACCCGTTTATCATGGGTTATAGTGTTGATAAAAGGCTCCGTCCTACTTCGGAGTTTCTGAAGTCAATTGGTCTGACTGAGCAGGATCTTCAAATGCTGGCGTTGAACTTCCCGTCGATTTTGAGTAGAGATGTGAACAAGGTTTTGGTACACAATTATGATTATTTAAAGGGTCGTGGGTTTCAAGGGAGGCAGATAGTTGATTTGGTGGTTGGTTTTCCGCCTATCCTAATCAAGAGTGTTAGGAATTCTTTAGAACCGAGGATCAAGTTTTTAGTAGATGTAATGGGGAGACAAGTTGATGAAATAATTGATTATCCCTGCTTCTTTCGTCACGGCCTGAAGAAAAAGTTAGTGTTGCGGCACAAACTACTGCAGCAGAGGAATTTGAATTGCAGCTTGAGTGAAATGCTGGACTGTAATGAGAAGAAGTTTCACTTGAAGTTTGGCTTGTTAGAAGGACATGCCCTGAGTAACTAG 1008 0.4097 METSSGNNSSNMMWFFKDRGFDDNIIQGMFKKCKRLEMVHQERASENWEYLKNIGIQERKLPSIVSKCPKILVLGLNEKILPMVECLNTLATKPHEVASAIAKFPHILSYSVEEKLCPVLAFFQALGVPEKQIGKILLLNPRLISYSIETKMGEIVKFLASIGLDKDGMIGKILVKDPFIMGYSVDKRLRPTSEFLKSIGLTEQDLQMLALNFPSILSRDVNKVLVHNYDYLKGRGFQGRQIVDLVVGFPPILIKSVRNSLEPRIKFLVDVMGRQVDEIIDYPCFFRHGLKKKLVLRHKLLQQRNLNCSLSEMLDCNEKKFHLKFGLLEGHALSN 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03808 335 Gene3D Transcription termination factor 3, mitochondrial 91 329 IPR038538 -
Vivi5g03808 335 FunFam transcription termination factor MTERF6, chloroplastic/mitochondrial 97 329 - -
Vivi5g03808 335 PANTHER CGI-12 PROTEIN-RELATED 132 253 IPR003690 GO:0003690|GO:0006355
Vivi5g03808 335 SMART mt_12 171 202 IPR003690 GO:0003690|GO:0006355
Vivi5g03808 335 SMART mt_12 27 57 IPR003690 GO:0003690|GO:0006355
Vivi5g03808 335 SMART mt_12 98 129 IPR003690 GO:0003690|GO:0006355
Vivi5g03808 335 SMART mt_12 134 165 IPR003690 GO:0003690|GO:0006355
Vivi5g03808 335 SMART mt_12 276 307 IPR003690 GO:0003690|GO:0006355
Vivi5g03808 335 SMART mt_12 62 93 IPR003690 GO:0003690|GO:0006355
Vivi5g03808 335 SMART mt_12 243 275 IPR003690 GO:0003690|GO:0006355
Vivi5g03808 335 SMART mt_12 207 238 IPR003690 GO:0003690|GO:0006355
Vivi5g03808 335 Pfam mTERF 113 321 IPR003690 GO:0003690|GO:0006355
Vivi5g03808 335 Pfam mTERF 11 124 IPR003690 GO:0003690|GO:0006355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vivi5g03808 mTERF 7.3e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03808 K15031 - gmx:100816929 545.043