Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03742 ATGGAGTTCTCCGTTGAGGCGGTGGGAAGCATAGACAACTGTTTCGTATCCCTCCCTTTACCTCTAATCCAAACTCTCCAATCCACATCTTCATCTTCCCTCCCTCCAATCCTCGCTCTCGAGCTTCGTTCCTCTACTCACTCCTGGTTCGTCGCCTGGTCCGGAGCCACTTCCTCTTCTCCTTCATCCATACAAATTTCTCAACAATTCGCCGAATGCGTCTCGTTACCGATTCACTCTCCAGTTCAAGTTAAAGTCGCTTCTAACATCCCTCACGCTTCCTCCGTCTCTATAGAGCCAGACACCGAGGATGATTGGGAAATTCTGGAGCTTAATTCTGAACAAGCCGAAGCTCAAATTCTCAATCAGGTTAGAATTGTTCATGAAGGGATGAAGTTTCCTTTGCGTCTAAATGGTCACACTGTTATCACATTCCATGTCGCTTCTGTTTTTCCCAAGAATGCGGTGGTACAACTCATGCCAGGAACCGAAGTTGATGTTGCTCCGAAGACACGCAAGCGAAATTCAGATTCACCAGGAGATTCACTTGTTGGTTCAAATAGTAAAGAGCATACTGCAAAGATGCTGCTCCGTTTACAGGAACCAAATGATTTATGCCGGACGAGCACTCATGTCAAAGGTGTTGAGCTTCATGTAGGGCTTACTCCGGTTGCTTTTGTTCATCCAGAAACAGCCAAGCGGTTCTCGTTTAACGTGCTTCAGTTGGTTTCCATAGTGCCGAGAGTATCCAAAGAGAATGTTAATAATTCTAGAACCAAATCAAACATTATGAAAGGCAAAGGTGGATCAGCGGTTAATCAAGTTGAGAATGGAGATACGGACAAGAAGGAACATCGACAAGCAATTGTTCATCTGTTGGTTTCAGAATCTGTGGCTAAAGGACATGTAATGCTAGCTAAGTCTCTTCGTCTTTATTTGAGAGCTAGCCTGCATTCATGGGTTTATTTGAAGGCATGTGATGTTATTTTGGAAAAAAGCATTCCTTCCATTTCTCTTTCTCCTTGTCGATTCAAACTGTTAAGGCAGGAGAGCAATGTTGTGAAAGATGGTCTAAATGATTTTCACGGCCACAGGAATCACATTGATGAAAAATTGCGTGGAAAAGCTACTTCAGGTGTCTCTTTGGATACTCTAAATTGGTCGATCCACAATGAAGTTGTTGCAGCTCTCTCTGATGAATCTAATAACAAAGCAGAGGAAGAGGTTGCAAGCCAATCTCAGAATCAAAAGGGATTACAAATTCTTGTACGACTATGGTATATTGCCCAGCTTGAGGCAATTTCTTCCATTATGGGGGTGGAAGTTAATTCATTGGTTATCGGTAGTAAAACCTTGCTTCATTTTGAGTTAAGCTGTTACAAGAATGGGAGTGATGAAAAACTTCAGCTGACTTCTTCAGGAAACATTGGCAAGGCAGTTGAAATGTTATTTTTATTAACCTTTGGTGAAGAAGATCTGCATCATGGGAAACTTACTGCATATGAAGTCTCACTTGGTGGAAAACTCAATAACATCAACATTGAGGATCTGAAGCTTTTTGAAAGAGTGAAATTGGGCGATCCTGTTTCTCTTCGTTTTATAGAAGAGAGAGCCTCCGAAGACCATATTAGTTCAAATGTATCTTTCCTTGGCTGGATGGAGAAAACTGCTTCTGATGTTATCAATAGGATGTTGGTATTATTATCTTCAGCATGTGGTGTGTGGTTTGGCTCATGCAACCTGCCGCTTCCTGGACATGTTCTAATATACGGACCTCCGGGCTCTGGGAAAACTATACTAGCAATGAATGTGGCAAAATCCCTTGAGAATCGCGAAGACATCTTAGCACACATAATTATTGTTTCCTGCTCAAAACTTGCTCTGGAGAAGGTCTCAATTATTCGCCAAGAACTTGCAAGCCATATGACTGAAGCTATAAATCATGCACCTTCTGTTGTCATCTTTGATGATCTTGATAGTATAATTTCTACCCCTGATTCTGAAGGATCTCAGCCATCAATGTCTGTTGCTGGACTCACAGATTTTCTTGCTGACATTGTAGATGAATATGGGGAGAAGAGGCGGAAATCATGTGGATTTGGACCAATAGCTTTCATAGCGACCATACAGTCCCTAGAGAATATGCCCCAATCTTTGAGCTCTTCAGGACGGTTTGACTTTCATATTAAGCTGCCTGCTCCTGCAGCTTCTGAGCGCAAGGCTATGTTGAAGAATATAATACAAAGGCGACACTTGCAATGTAATGATGACATCCTACTTGATGTGGCTGTAAAATGTGATGGTTATGATGGCTATGATCTGGAAATATTAGTTGACAGAACTGTCCATGCTGCTGTTCGCCGTTTTCTGCCATCTAATGCCATTTATGAGCATGAGGGTCCTGCTTTACTACAGGAGGATTTCTCTCAGGCAATGCATGATTTTCTCCCGGTTTCAATGCGTGACATCACAAAGTCTGTTTCTGATGATGGCCGTTCTGGATGGGACGATGTTGGCGGTCTAGTTGATATTCGAAATGCTATTAAAGAGATGATAGAATTGCCATCAAAGTTTCCAAAAACTTTTGCACAAGCACCATTAAGGTTGCGGTCAAATATCCTTTTATATGGTCCTCCCGGTTGTGGCAAAACTCACTTAGTTGGTGCTGCTGCGGCTGCTTCTTCACTTCGATTCATATCAGTGAAAGGGCCAGAACTGTTAAACAAATACATTGGTGCTTCTGAACAAGCTGTTAGAGATATATTCTCCAAAGCTGCTGCTGCAGCACCATGCCTACTTTTTTTTGATGAATTTGATTCTATTGCTCCTAAGAGAGGGCACGACAATACTGGAGTAACTGATCGTGTTGTCAATCAATTTTTGACTGAATTAGACGGTGTTGAGATTTTAGCGGGTGTTTTTGTGTTTGCTGCAACCAGTAGACCCGACTTACTGGATGCGGCACTGTTGAGACCGGGTAGGTTAGATCGTCTTCTATTTTGCGACTTTCCATCATGGCACGAGAGATTGGAAATTCTTACAGTACTTTCTAAAAAGTTACCAATGGCCAGTGATATTGATTTGGCTACAGTAGCTAATGTGACTGAAGGATTCAGTGGAGCTGATCTCCAAGCTCTCCTCTCAGATGCACAACTTGCTGCAGTTCATGATATTCTTGACAATATCGATACGTCTGGGTCAGAGAAAACACCAGTTATTACCGATGCTCTTCTAACGCTCACTGCATCCAATGCCAGACCTTCTGTTTCAGAAGAAGAGAAAAGACGACTCTACAGTATATATCGCCAGTTCCTGGATTCCAAGAGATCTGTTGCTGCCCAGTCAAGGGATGCAAAAGGCAAGAGGGCAACTCTAGCGTGA 3381 0.4259 MEFSVEAVGSIDNCFVSLPLPLIQTLQSTSSSSLPPILALELRSSTHSWFVAWSGATSSSPSSIQISQQFAECVSLPIHSPVQVKVASNIPHASSVSIEPDTEDDWEILELNSEQAEAQILNQVRIVHEGMKFPLRLNGHTVITFHVASVFPKNAVVQLMPGTEVDVAPKTRKRNSDSPGDSLVGSNSKEHTAKMLLRLQEPNDLCRTSTHVKGVELHVGLTPVAFVHPETAKRFSFNVLQLVSIVPRVSKENVNNSRTKSNIMKGKGGSAVNQVENGDTDKKEHRQAIVHLLVSESVAKGHVMLAKSLRLYLRASLHSWVYLKACDVILEKSIPSISLSPCRFKLLRQESNVVKDGLNDFHGHRNHIDEKLRGKATSGVSLDTLNWSIHNEVVAALSDESNNKAEEEVASQSQNQKGLQILVRLWYIAQLEAISSIMGVEVNSLVIGSKTLLHFELSCYKNGSDEKLQLTSSGNIGKAVEMLFLLTFGEEDLHHGKLTAYEVSLGGKLNNINIEDLKLFERVKLGDPVSLRFIEERASEDHISSNVSFLGWMEKTASDVINRMLVLLSSACGVWFGSCNLPLPGHVLIYGPPGSGKTILAMNVAKSLENREDILAHIIIVSCSKLALEKVSIIRQELASHMTEAINHAPSVVIFDDLDSIISTPDSEGSQPSMSVAGLTDFLADIVDEYGEKRRKSCGFGPIAFIATIQSLENMPQSLSSSGRFDFHIKLPAPAASERKAMLKNIIQRRHLQCNDDILLDVAVKCDGYDGYDLEILVDRTVHAAVRRFLPSNAIYEHEGPALLQEDFSQAMHDFLPVSMRDITKSVSDDGRSGWDDVGGLVDIRNAIKEMIELPSKFPKTFAQAPLRLRSNILLYGPPGCGKTHLVGAAAAASSLRFISVKGPELLNKYIGASEQAVRDIFSKAAAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEILAGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSWHERLEILTVLSKKLPMASDIDLATVANVTEGFSGADLQALLSDAQLAAVHDILDNIDTSGSEKTPVITDALLTLTASNARPSVSEEEKRRLYSIYRQFLDSKRSVAAQSRDAKGKRATLA 1126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03742 1126 SUPERFAMILY Cdc48 domain 2-like 91 169 IPR029067 -
Vivi5g03742 1126 Pfam AAA+ lid domain 1025 1064 IPR041569 -
Vivi5g03742 1126 Pfam ATPase family associated with various cellular activities (AAA) 873 1000 IPR003959 GO:0005524|GO:0016887
Vivi5g03742 1126 Pfam ATPase family associated with various cellular activities (AAA) 587 732 IPR003959 GO:0005524|GO:0016887
Vivi5g03742 1126 Gene3D - 1004 1083 - -
Vivi5g03742 1126 Gene3D - 735 828 - -
Vivi5g03742 1126 Gene3D - 834 1095 IPR027417 -
Vivi5g03742 1126 Pfam Peroxisome biogenesis factor 1, N-terminal 95 169 IPR015342 GO:0005524|GO:0005777|GO:0007031
Vivi5g03742 1126 FunFam Peroxisome biogenesis factor 1 91 170 - -
Vivi5g03742 1126 FunFam Peroxisome biogenesis protein 1 540 734 - -
Vivi5g03742 1126 SMART AAA_5 869 1005 IPR003593 GO:0016887
Vivi5g03742 1126 SMART AAA_5 583 735 IPR003593 GO:0016887
Vivi5g03742 1126 FunFam Nuclear valosin-containing protein-like 831 1009 - -
Vivi5g03742 1126 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 575 817 IPR027417 -
Vivi5g03742 1126 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 835 1091 IPR027417 -
Vivi5g03742 1126 CDD RecA-like_PEX1_r2 844 1001 - -
Vivi5g03742 1126 ProSitePatterns AAA-protein family signature. 973 991 IPR003960 GO:0005524|GO:0016887
Vivi5g03742 1126 MobiDBLite consensus disorder prediction 167 188 - -
Vivi5g03742 1126 SUPERFAMILY ADC-like 10 85 IPR009010 -
Vivi5g03742 1126 PANTHER AAA-FAMILY ATPASE 210 1102 - -
Vivi5g03742 1126 Gene3D - 91 171 - -
Vivi5g03742 1126 Gene3D - 537 734 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03742 Vivi-Chr5 131032338 131044378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03742 584 790 Calmodulin-binding Proteins AT3G56690 28.365 4.63e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03742 K13338 - gmx:100803882 1789.62