Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03740 ATGTCAAGGGATGAAATCAAGCCGCTTTCAGGAAAGCCATACTTTCATGTGGTTATTGCAAAATCACACGTTAGCCCTCGAAATGTACTGGTGCCGAGTGGCAAAATGTGCCAAAAACTTCCTTATGACGCAACAATTCCTACTGTTCTCAACTGTCGTGGTAAGAGCTGGGACATGACTTATAATGGGCAAAACAAATTCAAGCAGTTTGATACTACTGGCTGGAGAAACTTTGTTAAAGATAATAATTTGAAGATCGGAGACGCGTGCGTTTTTGAGCTCATGGAAAACAGTGAGGAGAAAATCGTTTTTGAAGTTCAAATTCTTAGAGGCGGATTTCCAGGAATTGATGAGTGTGAAGAAGAGCCGATTTTCAGATCCGAATTGTCTGGTACCGGTGAGAGTGATTCGCCATATGTCATCGAGTAG 429 0.4196 MSRDEIKPLSGKPYFHVVIAKSHVSPRNVLVPSGKMCQKLPYDATIPTVLNCRGKSWDMTYNGQNKFKQFDTTGWRNFVKDNNLKIGDACVFELMENSEEKIVFEVQILRGGFPGIDECEEEPIFRSELSGTGESDSPYVIE 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03740 142 ProSiteProfiles B3 DNA-binding domain profile. 14 112 IPR003340 GO:0003677
Vivi5g03740 142 SMART B3_2 15 112 IPR003340 GO:0003677
Vivi5g03740 142 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 11 112 IPR044837 -
Vivi5g03740 142 SUPERFAMILY DNA-binding pseudobarrel domain 11 110 IPR015300 -
Vivi5g03740 142 Pfam B3 DNA binding domain 16 105 IPR003340 GO:0003677
Vivi5g03740 142 CDD B3_DNA 13 110 IPR003340 GO:0003677
Vivi5g03740 142 Gene3D - 3 111 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03740 Vivi-Chr5 131019989 131021932 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03740 15 111 REM Transcription Factor Family AT4G33280 32.353 2.41e-09 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi5g03740 B3 5.9e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03740 - - psat:127100519 243.432