Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03739 ATGCTGGGTGGGTTATACGGCGACCTACCTCCACCTTCTTCCGCCGAAGAAGACAAACCCACCACCAATGTCTGGTCCAGCAGCACCAAAATGGCCCCCGCCACTCTCCGTAAACCCTCCTCTATTTTCACTCCTCCTCATACTCTTCTCAGATCCCAAAACAAACCTAAAATCTCCAATTCCAAAACGATTCTCTCCACGGCGCCGACGATACTCGCTCCGGCGGTGGACGAGGTGGTGCAGCCGGCTCTGGTGGGTGTGCAGTCGACGGTGTTGGAAGAGTATGATCCAGCAAGGCCTAATGACTATGAAGAGTATCGGAGGGAGAAGAAGAGGAAGGCTAGGGAAGCGGAGATGATGAGGGAGCTGGAGAGACGGCGGGAGGAGGAGGAAGAGAGGGAGAGAGAAAGGGAAAGAGAGAGAAAAAAAGAAAGAGAAAGAGATAGGGATAGGGATAGAGATAGGGATCAGGGTGATTCGAGATTGAATATTTCAGGTGAGGAAGCGTGGAGGAGGCGTGTGGGGATGAGTGCTGGTGGAAGTGGAGGGGGGCCGCCGAGGTCGCCGTCTCCGCCGGGTAATGTGGATGGGTTTACTATTGGAAAGTCTGAGACGGGAGGGTTGGGGGTTGGTGCTGGTGGGCAGATGACTGCTGCTCAGAGGATGATGGCGAAGATGGGGTGGAAAGAAGGGCAGGGGCTTGGGAAGCAGGAGCAAGGGATTACTACTCCTTTGATGGCTAAGAAAACGGATAGACGGGCCGGGGTTATTGTCAATGCTAGTGACAGTAAGTCTGATAAGAAAGTTAAGAGTGTTAACATCAATGGGGTTCCTACCAGAGTGATGCTACTTCGAAATATGGTGGGGCCTGGTGAGGTAGATGATGAGCTGGAAGATGAGGTAGGATCAGAATGCGCCAAGTATGGAACAGTAACCCGAGTTCTGATATTTGAGATAACAGAGCCAAATTTTCCCACCGACGAAGCAGTAAGAATCTTTGTGCAGTTTGAGAGATCCGAAGAAACAACTAAAGCGCTTGTTGACCTTGATGGTCGATACTTTGGAGGTAGAATAGTGCGTGCCACATTTTATGATGAGGATAAGTTTAGCAAGAATGAGTTAGCTCCTATGCCTGGAGAAATTCCTGGATTCACCTAG 1158 0.5078 MLGGLYGDLPPPSSAEEDKPTTNVWSSSTKMAPATLRKPSSIFTPPHTLLRSQNKPKISNSKTILSTAPTILAPAVDEVVQPALVGVQSTVLEEYDPARPNDYEEYRREKKRKAREAEMMRELERRREEEEERERERERERKKERERDRDRDRDRDQGDSRLNISGEEAWRRRVGMSAGGSGGGPPRSPSPPGNVDGFTIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDRRAGVIVNASDSKSDKKVKSVNINGVPTRVMLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPTDEAVRIFVQFERSEETTKALVDLDGRYFGGRIVRATFYDEDKFSKNELAPMPGEIPGFT 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03739 385 FunFam Putative splicing factor 45 279 365 - -
Vivi5g03739 385 PIRSF SPF45 3 381 IPR040052 GO:0045292
Vivi5g03739 385 SMART G-patch_5 213 259 IPR000467 GO:0003676
Vivi5g03739 385 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 270 366 IPR000504 GO:0003723
Vivi5g03739 385 MobiDBLite consensus disorder prediction 88 213 - -
Vivi5g03739 385 Gene3D - 276 374 IPR012677 -
Vivi5g03739 385 ProSiteProfiles G-patch domain profile. 215 261 IPR000467 GO:0003676
Vivi5g03739 385 MobiDBLite consensus disorder prediction 16 55 - -
Vivi5g03739 385 Coils Coil 103 148 - -
Vivi5g03739 385 PANTHER SPLICING FACTOR 45 SPF45 1 376 IPR040052 GO:0045292
Vivi5g03739 385 MobiDBLite consensus disorder prediction 1 55 - -
Vivi5g03739 385 Pfam G-patch domain 218 257 IPR000467 GO:0003676
Vivi5g03739 385 MobiDBLite consensus disorder prediction 97 168 - -
Vivi5g03739 385 CDD RRM_UHM_SPF45 278 374 IPR034653 -
Vivi5g03739 385 SMART rrm2_1 281 362 IPR003954 GO:0003676
Vivi5g03739 385 SUPERFAMILY RNA-binding domain, RBD 279 369 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03739 Vivi-Chr5 131014416 131019719 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03739 221 256 C2H2 Transcription Factor Family AT5G26610 61.111 1.14e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03739 K12840 - qsa:O6P43_013116 490.73