Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03675 ATGCCAGGAACTGAAGTTGACGTTGCTCCAAAGACACGCAAGCGAAATTCAGATTCACCAGAAGATTCACATGTTGGTTCAAATAGTAAGGAGCATACTGCAAAGATGCTGCTCCGTTTACAGGAACCAACTGATTTATGTCGTACCAGTACTCATGTCAAAGGTGTTGAGCTTCATGTAGGGCTTACTCCGGTTGCTTTTGTTCACCCAGAAACAGCCAAGCGGTTCTCGTTTAACGTGCTTCAGTTGGTTTCCATAGTGCCGAGAGTATCCAAAGAGAATGTTAGTAATTCCAGAACCAAATCAAACATTATGAAAGGCAAAAGTGGTTCGGCTGTTAATCAAGTTGAGAATGGAGATACGGACAAGAAGGAACATCGACAAGCAATTGTTCATCTGTTGATTTCAGAATCTGTGGCTAAAGGACATGTAATGCTAGCTAAGTCTCTTCGTCTTTATTTGAGAGCTAGCCTGCATTCATGGGTTTATTTGAAGGCATGTGATGTTATTTTGGAAAAAAGCATTCCTTCCATTTCTCTTTCTCCTTGTCGATTCAAACTGTTAAGGCAGGAGAGCAGTGTTGTGAAAGATGGTCTAAATGATTTTCACGGCCACAGGAATCACATTGATGAAAAATTGCATGGAAAAGCTACTTCAGGTGTCTCTTTGGATACTCTAAATTGGTCGATCCACAATGAAGTTGTTGCAGCTCTCTCTGATGAATCTAATAACAAAGCAAAGGAAGAGGTTGCAAGCCAATCTCAGAATCAAAAGGGATTACAAATTCTTGTACGACTATGGTATATTGCCCAGCTTGAGGCAATTTCTTCCATTACGGGGGTGGAAGTTAATTCATTGGTTATCGGTAGTAAAACCTTGCTTCATTTTGAGTTAAGCTGTTACAAGAATGGGAGTGATGAAAAACTTCAGCTGACTTCTTCAGGAAACATTGGCAAGGCAGTTGAAATGTTATTTTTATTAACCTTTGGTGAAGAAGATCTGCACCATGGGAAACTTACTGCATATGAAGTCTCACTTGGTGGAAAACTCAATAACATCAACATTGAGGATCTGAAGCTTTTTGAAAGAGTGAAATTGGGCGATCCTGTTTCTCTTCGTTTTTTAGAAGAGAGAGCCTCCGAAGACCATATTAGTTCAAATGTATCTTTCCTTGGCTGGATGGAGAAAACTGCTTCTGATGTTATCAATAGGATGTTGGTATTATTATCTTCAGCATGTGGTTTGTGGTTTGGCTCATGCAACCTGCCGCTTCCTGGACATGTTCTAATATACGGACCTCCGGGCTCTGGGAAAACTATACTAGCAATGAATGTGGCAAAATCCCTTGAGAATCGCGAAGACATCTTAGCACACATAATTGTTGTTTCCTGCTCAAAACTTGCTTTGGAGAAAGTCTCAGTTATTCGCCAAGAACTTGCAAACCATATAACTGATGCTATAAACCATGCACCTTCTGTCGTCATCTTTGATGATCTTGATAGTATAATTTCTACCCCTGATTCCGAAGGATCTCAGCCATCAATGTCTGTTGCTGGACTCACAGATTTTCTTGCTGACATTGTGGATGAATATGGGGAGAAGAGGCGGAAATCATGTGGATTTGGACCAATAGCTTTCATAGCAACCATACAGTCCCTAGAGAATATGCCACAATCTTTGAGCTCTTCAGGTCGGTTTGACTTTCACATTAAGCTGCCTGCTCCTGCAGCTTCTGAGCGCAAGGCTATGTTGAAGAATATAATACAAAGGCGGCACTTGCAATGTAATGATGACATCCTACTTGACGTGGTTGTAAAATGTGATGGTTATGATGGCTATGATCTGGAAATATTAGTTGACAGAACTGTCCATGCTGCCGTTCGCCGTTTTCTGCCATCTAATGCCATTTATGAGCATGAGGGTCCAGCTTTACTACAGGAGGATTTCTCTCAGGCAATGCATGATTTTCTCCCGGTTTCAATGCGTGACATTACAAAATCTGTTTCTGATGATGGCCGTTCTGGATGGGACGATGTTGGTGGTCTGGTTGATATTCGAAATGCTATTAAAGAGATGATAGAATTGCCATCAAAGTTTCCAAAAACTTTTGCACAAGCACCATTAAGATTGCGGTCAAATATCCTTTTATATGGTCCTCCCGGTTGTGGCAAAACTCACATAGTTGGTGCTGCTGCGGCTGCTTCTTCACTTCGATTCATATCAGTGAAAGGGCCAGAGCTGTTAAACAAATACATTGGTGCTTCTGAACAAGCTGTTAGAGATATATTCTCCAAAGCTGCTGCTGCAGCACCATGCCTACTTTTTTTTGATGAATTTGATTCTATTGCTCCTAAGAGAGGGCACGACAATACTGGAGTAACTGATCGTGTTGTCAATCAATTTTTGACTGAATTAGACGGTGTTGAGATTTTAGCAGGTGTTTTTGTGTTTGCTGCAACCAGTAGACCCGACTTACTGGATGCGGCACTGTTGAGACCGGGTAGGTTAGATCGTCTTCTATTTTGCGACTTTCCATCATGGCATGAGAGATTGGAAATTCTTACAGTACTTTCTAAAAAGTTACCAATGGCCAGTGATATTGATTTAGCTACAGTAGCTAATGTGACTGAAGGATTCAGTGGAGCTGATCTCCAAGCTCTCCTCTCAGATGCACAACTTGCTGCAGTTCATGATATTCTTGACAATATCGATACGTCTGGATCAGAGAAAACACCAGTTATTACTGATGCTCTTCTAACGCTCACTGCATCCAATGCCAGACCTTCTGTTTCAGAAGAAGAGAAAAGACGACTCTACAGTATATATCACCAGTTCCTGGATTCCAAGAGATCTGTTGCTGCCCAGTCAAGGGATGCAAAAGGCAAGAGGGCAACTCTAGCGTGA 2904 0.416 MPGTEVDVAPKTRKRNSDSPEDSHVGSNSKEHTAKMLLRLQEPTDLCRTSTHVKGVELHVGLTPVAFVHPETAKRFSFNVLQLVSIVPRVSKENVSNSRTKSNIMKGKSGSAVNQVENGDTDKKEHRQAIVHLLISESVAKGHVMLAKSLRLYLRASLHSWVYLKACDVILEKSIPSISLSPCRFKLLRQESSVVKDGLNDFHGHRNHIDEKLHGKATSGVSLDTLNWSIHNEVVAALSDESNNKAKEEVASQSQNQKGLQILVRLWYIAQLEAISSITGVEVNSLVIGSKTLLHFELSCYKNGSDEKLQLTSSGNIGKAVEMLFLLTFGEEDLHHGKLTAYEVSLGGKLNNINIEDLKLFERVKLGDPVSLRFLEERASEDHISSNVSFLGWMEKTASDVINRMLVLLSSACGLWFGSCNLPLPGHVLIYGPPGSGKTILAMNVAKSLENREDILAHIIVVSCSKLALEKVSVIRQELANHITDAINHAPSVVIFDDLDSIISTPDSEGSQPSMSVAGLTDFLADIVDEYGEKRRKSCGFGPIAFIATIQSLENMPQSLSSSGRFDFHIKLPAPAASERKAMLKNIIQRRHLQCNDDILLDVVVKCDGYDGYDLEILVDRTVHAAVRRFLPSNAIYEHEGPALLQEDFSQAMHDFLPVSMRDITKSVSDDGRSGWDDVGGLVDIRNAIKEMIELPSKFPKTFAQAPLRLRSNILLYGPPGCGKTHIVGAAAAASSLRFISVKGPELLNKYIGASEQAVRDIFSKAAAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEILAGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSWHERLEILTVLSKKLPMASDIDLATVANVTEGFSGADLQALLSDAQLAAVHDILDNIDTSGSEKTPVITDALLTLTASNARPSVSEEEKRRLYSIYHQFLDSKRSVAAQSRDAKGKRATLA 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03675 967 SMART AAA_5 424 576 IPR003593 GO:0016887
Vivi5g03675 967 SMART AAA_5 710 846 IPR003593 GO:0016887
Vivi5g03675 967 Gene3D - 379 575 IPR027417 -
Vivi5g03675 967 ProSitePatterns AAA-protein family signature. 814 832 IPR003960 GO:0005524|GO:0016887
Vivi5g03675 967 Gene3D - 675 936 IPR027417 -
Vivi5g03675 967 Pfam ATPase family associated with various cellular activities (AAA) 428 573 IPR003959 GO:0005524|GO:0016887
Vivi5g03675 967 Pfam ATPase family associated with various cellular activities (AAA) 714 841 IPR003959 GO:0005524|GO:0016887
Vivi5g03675 967 CDD RecA-like_PEX1_r2 685 842 - -
Vivi5g03675 967 Gene3D - 845 924 - -
Vivi5g03675 967 Gene3D - 576 669 - -
Vivi5g03675 967 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 676 932 IPR027417 -
Vivi5g03675 967 Pfam AAA+ lid domain 866 905 IPR041569 -
Vivi5g03675 967 MobiDBLite consensus disorder prediction 97 117 - -
Vivi5g03675 967 MobiDBLite consensus disorder prediction 97 122 - -
Vivi5g03675 967 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 416 658 IPR027417 -
Vivi5g03675 967 PANTHER AAA-FAMILY ATPASE 53 941 - -
Vivi5g03675 967 FunFam Peroxisome biogenesis protein 1 381 575 - -
Vivi5g03675 967 MobiDBLite consensus disorder prediction 1 30 - -
Vivi5g03675 967 MobiDBLite consensus disorder prediction 8 29 - -
Vivi5g03675 967 FunFam Nuclear valosin-containing protein-like 672 850 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03675 Vivi-Chr5 130183208 130199605 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03675 708 913 Calmodulin-binding Proteins AT3G56690 38.095 4.65e-37 149