Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03674 ATGGAGTTCTCCGTCGAGGCGGTGGGAAGCATAGAAAACTGTTTCGTATCCCTCCCTTTACCTCTAATCCAAACTCTCCAATCCACATCTTCATCTTCCCTCCCTCCAATCCTCGCTCTCGAGCTTCGTTCCTCTACTCACTCTCCTCACTCCTGGTTCGTCGCCTGGTCCGGAGCCACTTCCTCTTCTCCTTCATCCATACAAATTTCTCAACAATTCGCCGAATGCGTCTCGTTACCGATTCACTCTCCAGTTCAAGTTAAAGTCGCTTCTAACATCCCTCACGCTTCCTCCGTCTCTATAGAGCCAGATACCGAAGATGATTGGGAGATTCTGGAACTTAATTCCGAACAAGCCGAAGCTCAAATTCTCAATCAGGTTAGGATTGTTCATGAAGGGATGAAGTTTCCTTTGCGTCTAAATGGTCACACTGTTATCACATTCCATGTCGCTTCTGTTTTTCCCAAGAATGCGGTGGTACAACTCATGCCAGGAACTGAAGTTGACGTTGCTCCAAAGACACGCAAGCGAAATTCAGATTCACCAGAAGATTCACATGTTGGTTCAAATAGTAAGGAGCATACTGCAAAGATGCTGCTCCGTTTACAGGAACCAACTGATTTATGTCGTACCAGTACTCATGTCAAAGGTGTTGAGCTTCATGTAGGGCTTACTCCGGTTGCTTTTGTTCACCCAGAAACAGCCAAGCGGTTCTCGTTTAACGTGCTTCAGTTGGTTTCCATAGTGCCGAGAGTATCCAAAGAGAATGTTAGTAATTCCAGAACCAAATCAAACATTATGAAAGGCAAAAGTGGTTCGGCTGTTAATCAAGTTGAGAATGGAGATACGGACAAGAAGGAACATCGACAAGCAATTGTTCATCTGTTGATTTCAGAATCTGTGGCTAAAGGACATGTAATGCTAGCTAAGTCTCTTCGTCTTTATTTGAGAGCTAGCCTGCATTCATGGGTTTATTTGAAGGCATGTGATGTTATTTTGGAAAAAAGCATTCCTTCCATTTCTCTTTCTCCTTGTCGATTCAAACTGTTAAGGCAGGAGAGCAGTGTTGTGAAAGATGGTCTAAATGATTTTCACGGCCACAGGAATCACATTGATGAAAAATTGCATGGAAAAGCTACTTCAGGTGTCTCTTTGGATACTCTAAATTGGTCGATCCACAATGAAGTTGTTGCAGCTCTCTCTGATGAATCTAATAACAAAGCAAAGGAAGAGGTTGCAAGCCAATCTCAGAATCAAAAGGGATTACAAATTCTTGTACGACTATGGTATATTGCCCAGCTTGAGGCAATTTCTTCCATTACGGGGGTGGAAGTTAATTCATTGGTTATCGGTAGTAAAACCTTGCTTCATTTTGAGTTAAGCTGTTACAAGAATGGGAGTGATGAAAAACTTCAGCTGACTTCTTCAGGAAACATTGGCAAGGCAGTTGAAATGTTATTTTTATTAACCTTTGGTGAAGAAGATCTGCACCATGGGAAACTTACTGCATATGAAGTCTCACTTGGTGGAAAACTCAATAACATCAACATTGAGGATCTGAAGCTTTTTGAAAGAGTGAAATTGGGCGATCCTGTTTCTCTTCGTTTTTTAGAAGAGAGAGCCTCCGAAGACCATATTAGTTCAAATGTATCTTTCCTTGGCTGGATGGAGAAAACTGCTTCTGATGTTATCAATAGGATGTTGGTATTATTATCTTCAGCATGTGGTTTGTGGTTTGGCTCATGCAACCTGCCGCTTCCTGGACATGTTCTAATATACGGACCTCCGGGCTCTGGGAAAACTATACTAGCAATGAATGTGGCAAAATCCCTTGAGAATCGCGAAGACATCTTAGCACACATAATTGTTGTTTCCTGCTCAAAACTTGCTTTGGAGAAAGTCTCAGTTATTCGCCAAGAACTTGCAAACCATATAACTGATGCTATAAACCATGCACCTTCTGTCGTCATCTTTGATGATCTTGATAGTATAATTTCTACCCCTGATTCCGAAGGATCTCAGCCATCAATGTCTGTTGCTGGACTCACAGATTTTCTTGCTGACATTGTGGATGAATATGGGGAGAAGAGGCGGAAATCATGTGGATTTGGACCAATAGCTTTCATAGCAACCATACAGTCCCTAGAGAATATGCCACAATCTTTGAGCTCTTCAGGTCGGTTTGACTTTCACATTAAGCTGCCTGCTCCTGCAGCTTCTGAGCGCAAGGCTATGTTGAAGAATATAATACAAAGGCGGCACTTGCAATGTAATGATGACATCCTACTTGACGTGGTTGTAAAATGTGATGGTTATGATGGCTATGATCTGGAAATATTAGTTGACAGAACTGTCCATGCTGCCGTTCGCCGTTTTCTGCCATCTAATGCCATTTATGAGCATGAGGGTCCAGCTTTACTACAGGAGGATTTCTCTCAGGCAATGCATGATTTTCTCCCGGTTTCAATGCGTGACATTACAAAATCTGTTTCTGATGATGGCCGTTCTGGATGGGACGATGTTGGTGGTCTGGTTGATATTCGAAATGCTATTAAAGAGATGATAGAATTGCCATCAAAGTTTCCAAAAACTTTTGCACAAGCACCATTAAGATTGCGGTCAAATATCCTTTTATATGGTCCTCCCGGTTGTGGCAAAACTCACATAGTTGGTGCTGCTGCGGCTGCTTCTTCACTTCGATTCATATCAGTGAAAGGGCCAGAGCTGTTAAACAAATACATTGGTGCTTCTGAACAAGCTGTTAGAGATATATTCTCCAAAGCTGCTGCTGCAGCACCATGCCTACTTTTTTTTGATGAATTTGATTCTATTGCTCCTAAGAGAGGGCACGACAATACTGGAGTAACTGATCGTGTTGTCAATCAATTTTTGACTGAATTAGACGGTGTTGAGATTTTAGCAGGTGTTTTTGTGTTTGCTGCAACCAGTAGACCCGACTTACTGGATGCGGCACTGTTGAGACCGGGTAGGTTAGATCGTCTTCTATTTTGCGACTTTCCATCATGGCATGAGAGATTGGAAATTCTTACAGTACTTTCTAAAAAGTTACCAATGGCCAGTGATATTGATTTAGCTACAGTAGCTAATGTGACTGAAGGATTCAGTGGAGCTGATCTCCAAGCTCTCCTCTCAGATGCACAACTTGCTGCAGTTCATGATATTCTTGACAATATCGATACGTCTGGATCAGAGAAAACACCAGTTATTACTGATGCTCTTCTAACGCTCACTGCATCCAATGCCAGACCTTCTGTTTCAGAAGAAGAGAAAAGACGACTCTACAGTATATATCACCAGTTCCTGGATTCCAAGAGATCTGTTGCTGCCCAGTCAAGGGATGCAAAAGGCAAGAGGGCAACTCTAGCGTGA 3390 0.4242 MEFSVEAVGSIENCFVSLPLPLIQTLQSTSSSSLPPILALELRSSTHSPHSWFVAWSGATSSSPSSIQISQQFAECVSLPIHSPVQVKVASNIPHASSVSIEPDTEDDWEILELNSEQAEAQILNQVRIVHEGMKFPLRLNGHTVITFHVASVFPKNAVVQLMPGTEVDVAPKTRKRNSDSPEDSHVGSNSKEHTAKMLLRLQEPTDLCRTSTHVKGVELHVGLTPVAFVHPETAKRFSFNVLQLVSIVPRVSKENVSNSRTKSNIMKGKSGSAVNQVENGDTDKKEHRQAIVHLLISESVAKGHVMLAKSLRLYLRASLHSWVYLKACDVILEKSIPSISLSPCRFKLLRQESSVVKDGLNDFHGHRNHIDEKLHGKATSGVSLDTLNWSIHNEVVAALSDESNNKAKEEVASQSQNQKGLQILVRLWYIAQLEAISSITGVEVNSLVIGSKTLLHFELSCYKNGSDEKLQLTSSGNIGKAVEMLFLLTFGEEDLHHGKLTAYEVSLGGKLNNINIEDLKLFERVKLGDPVSLRFLEERASEDHISSNVSFLGWMEKTASDVINRMLVLLSSACGLWFGSCNLPLPGHVLIYGPPGSGKTILAMNVAKSLENREDILAHIIVVSCSKLALEKVSVIRQELANHITDAINHAPSVVIFDDLDSIISTPDSEGSQPSMSVAGLTDFLADIVDEYGEKRRKSCGFGPIAFIATIQSLENMPQSLSSSGRFDFHIKLPAPAASERKAMLKNIIQRRHLQCNDDILLDVVVKCDGYDGYDLEILVDRTVHAAVRRFLPSNAIYEHEGPALLQEDFSQAMHDFLPVSMRDITKSVSDDGRSGWDDVGGLVDIRNAIKEMIELPSKFPKTFAQAPLRLRSNILLYGPPGCGKTHIVGAAAAASSLRFISVKGPELLNKYIGASEQAVRDIFSKAAAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEILAGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSWHERLEILTVLSKKLPMASDIDLATVANVTEGFSGADLQALLSDAQLAAVHDILDNIDTSGSEKTPVITDALLTLTASNARPSVSEEEKRRLYSIYHQFLDSKRSVAAQSRDAKGKRATLA 1129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03674 1129 Gene3D - 94 174 - -
Vivi5g03674 1129 MobiDBLite consensus disorder prediction 170 191 - -
Vivi5g03674 1129 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 838 1093 IPR027417 -
Vivi5g03674 1129 Gene3D - 541 737 IPR027417 -
Vivi5g03674 1129 MobiDBLite consensus disorder prediction 170 192 - -
Vivi5g03674 1129 MobiDBLite consensus disorder prediction 259 284 - -
Vivi5g03674 1129 MobiDBLite consensus disorder prediction 259 279 - -
Vivi5g03674 1129 CDD RecA-like_PEX1_r2 847 1004 - -
Vivi5g03674 1129 Gene3D - 738 831 - -
Vivi5g03674 1129 PANTHER AAA-FAMILY ATPASE 213 1103 - -
Vivi5g03674 1129 SUPERFAMILY ADC-like 10 88 IPR009010 -
Vivi5g03674 1129 Pfam ATPase family associated with various cellular activities (AAA) 590 735 IPR003959 GO:0005524|GO:0016887
Vivi5g03674 1129 Pfam ATPase family associated with various cellular activities (AAA) 876 1003 IPR003959 GO:0005524|GO:0016887
Vivi5g03674 1129 SUPERFAMILY Cdc48 domain 2-like 94 172 IPR029067 -
Vivi5g03674 1129 ProSitePatterns AAA-protein family signature. 976 994 IPR003960 GO:0005524|GO:0016887
Vivi5g03674 1129 Pfam AAA+ lid domain 1028 1067 IPR041569 -
Vivi5g03674 1129 Pfam Peroxisome biogenesis factor 1, N-terminal 98 172 IPR015342 GO:0005524|GO:0005777|GO:0007031
Vivi5g03674 1129 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 578 820 IPR027417 -
Vivi5g03674 1129 FunFam Nuclear valosin-containing protein-like 834 1012 - -
Vivi5g03674 1129 Gene3D - 837 1098 IPR027417 -
Vivi5g03674 1129 Gene3D - 1007 1086 - -
Vivi5g03674 1129 FunFam Peroxisome biogenesis factor 1 94 173 - -
Vivi5g03674 1129 SMART AAA_5 586 738 IPR003593 GO:0016887
Vivi5g03674 1129 SMART AAA_5 872 1008 IPR003593 GO:0016887
Vivi5g03674 1129 FunFam Peroxisome biogenesis protein 1 543 737 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03674 Vivi-Chr5 130183208 130200112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03674 587 793 Calmodulin-binding Proteins AT3G56690 28.365 2.07e-11 66.6