Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03671 ATGAAAGAAAGTGGTGGAGGTAGAAAACAAGGTGCAGCTTCACCCTGTGCTGCATGCAAACTTCTAAGAAGAAGATGTGCTCAAGATTGTGTCTTTGCTCCTTATTTCCCTGCCGACGAACCTCACAAGTTTGCTAATGTACACAAAGTCTTTGGTGCTAGCAATGTCAACAAAATGCTTCAGGACTTACCTGAACATCAAAGAGGGGATGCAGTGAGTAGCATGGTGTATGAAGCAAATGCAAGGGTTAGAGACCCTGTGTATGGTTGTGTAGGGGCCATTTCATCACTTCAGCAACAAATTGATGTTCTTCAAACCCAATTGGCTGTGGCTCAAGCTGAGGCTGTGCACCTAAGGGTGCGCCAAACTGCATCATCTTTTTGGAACAGTGCAGGACATAGCCCAACTAGCCCAACCTATAGTGGCTCCCCATCATCTAAGATCAATGAATCACAAGCCAAACATATCTTTGATATGGACATGGTGGTGGACCAAGGTGGTTATGCTGATTCAATGTGGTGA 522 0.4521 MKESGGGRKQGAASPCAACKLLRRRCAQDCVFAPYFPADEPHKFANVHKVFGASNVNKMLQDLPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLAVAQAEAVHLRVRQTASSFWNSAGHSPTSPTYSGSPSSKINESQAKHIFDMDMVVDQGGYADSMW 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03671 173 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 12 141 - -
Vivi5g03671 173 Coils Coil 94 114 - -
Vivi5g03671 173 ProSiteProfiles LOB domain profile. 14 115 IPR004883 -
Vivi5g03671 173 MobiDBLite consensus disorder prediction 128 148 - -
Vivi5g03671 173 Pfam Lateral organ boundaries (LOB) domain 15 112 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03671 Vivi-Chr5 130164716 130168525 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03671 1 173 AS2 family AT1G31320 69.318 1.12e-73 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vivi5g03671 LOB 7.9e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03671 - - jre:108980655 273.863