Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03660 ATGGAGGAGAAGCAGAGGAAGTTTGTTTGTAAGTATTGTTTCAAGAGATATCCTTGTGGAAAGTCTCTTGGTGGTCATATAAGAACACATATGAGTGAGCAAAGAACTCACAATGCTGCTGCTGCCGCTGTTGCTGCTGCTGCTGTTGCTGATGCTCGTGTTTTCAAGGTAGATCATGCTGTTAGGAACAAGAGAGATTCGTCGTGTTCCGAAGGTGTTGGTGCTGATGGAAACAATAGTTATGGTCTTAGAGAGAATCCGAGGAAAACAATGAGGTTTGTGCATTCGAATCATCATCGTGATCGTGATCGTCGTCATGATGCTGCTGCTGCTGCTGCGGATATGGAGCATGAAATGATCAAATTCTGTAAAGAATGTGGGAAGGGATTTCCTTCGTCGAAAGCTCTTTGTGGTCATATGGCTTCTCATTCTGAGAAAGAGAAAAAGATCAATAGATTTGATCAAGTTATGGAGGATAGTCAATCTGATGATGATACTGATGATGCTTGTGCTGTTGCTGAAACAATGAATCTGAGGAAATCAAAAAGAAGAATTAGGTTCAAGTCTCTTACTCTTTCGAATCAGAATCAAAATCTAATTCAAAATCAACCTTCTTCTTGTTCTGTTGATGGTTCTTCATCTATGTCAGAGATGGAACAAGAACAACAACAAGAGGTTGCTATGTGTTTGATGCTTTTGTCTAGAGATTTTTTTAGTCATAAGGGTCGTTTTGTTTCTGAATCTTCTGATAATAATAGCGCGGTTGTTTTAGAGACGAAATCGTACATTTCTGATAAAAAGATTGTTATTAGAAATTGTAACAAATTTGTCTCTAGTAATGATGATCATCATGAAGCTGCCGAGAAGAAGCTGAAGCTGAAGTCTGTTGGGATTGGTGTTTCGAATAAATCGGATTCGAGAGATTTCAGATATGCTTCCAAGATCAAAATTGTAGATTCAAAAGCTTCAAACTTTGAATTCAAGAGGCCGAAAGTGGAAGAAGATAAATCTGGATTCGCGGATTGCAAAAGCAAATACAATGTAGCAACAACTGGGTTTAAGAAACCAGGGATGATGAATAAGGATTTGGATCATGATTCGAGAAAGAAACCGAACTATGAAGGATTTGGTTTCAACAACGGCAACAAGAATGAAGAAATCAATGAAGATGTTAGAAACAGTTTGAAATACGAGTTTTATGGTAGCGAAAAGGACGATGATTCTTCGTATGTTTCAACAACAGATGAAGAGAGTGATGAAGAAATCAGTTCCGAAAGTGATTCATTCCTTGCTGCAAAATCTCATAACAGCAAAAAGAAATCAAGTAACAAAGCTAAGAAGAAGTTGAAGTCAAAGAAAAGCAAGGAATATGAGTGTCCAATTTGCTACAAAATTTTCAGGTCAGGACAAGCATTAGGAGGACATAAAAGATCACATTTTGTTGGAGGATCTGAAGAGAACACTACTTTTGTCATCAAACAAAATGCTGCTGCTCCTTGTTTGATTGATCTCAATCTACCTGCTCCTGTTGATGAATAA 1539 0.3782 MEEKQRKFVCKYCFKRYPCGKSLGGHIRTHMSEQRTHNAAAAAVAAAAVADARVFKVDHAVRNKRDSSCSEGVGADGNNSYGLRENPRKTMRFVHSNHHRDRDRRHDAAAAAADMEHEMIKFCKECGKGFPSSKALCGHMASHSEKEKKINRFDQVMEDSQSDDDTDDACAVAETMNLRKSKRRIRFKSLTLSNQNQNLIQNQPSSCSVDGSSSMSEMEQEQQQEVAMCLMLLSRDFFSHKGRFVSESSDNNSAVVLETKSYISDKKIVIRNCNKFVSSNDDHHEAAEKKLKLKSVGIGVSNKSDSRDFRYASKIKIVDSKASNFEFKRPKVEEDKSGFADCKSKYNVATTGFKKPGMMNKDLDHDSRKKPNYEGFGFNNGNKNEEINEDVRNSLKYEFYGSEKDDDSSYVSTTDEESDEEISSESDSFLAAKSHNSKKKSSNKAKKKLKSKKSKEYECPICYKIFRSGQALGGHKRSHFVGGSEENTTFVIKQNAAAPCLIDLNLPAPVDE 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03660 512 MobiDBLite consensus disorder prediction 403 449 - -
Vivi5g03660 512 ProSitePatterns Zinc finger C2H2 type domain signature. 10 30 IPR013087 -
Vivi5g03660 512 ProSiteProfiles Zinc finger C2H2 type domain profile. 121 148 IPR013087 -
Vivi5g03660 512 ProSiteProfiles Zinc finger C2H2 type domain profile. 8 35 IPR013087 -
Vivi5g03660 512 ProSitePatterns Zinc finger C2H2 type domain signature. 123 143 IPR013087 -
Vivi5g03660 512 ProSitePatterns Zinc finger C2H2 type domain signature. 459 479 IPR013087 -
Vivi5g03660 512 MobiDBLite consensus disorder prediction 66 85 - -
Vivi5g03660 512 MobiDBLite consensus disorder prediction 356 387 - -
Vivi5g03660 512 Pfam C2H2-type zinc finger 457 479 - -
Vivi5g03660 512 Pfam C2H2-type zinc finger 8 33 - -
Vivi5g03660 512 Pfam C2H2-type zinc finger 123 145 - -
Vivi5g03660 512 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 512 - -
Vivi5g03660 512 SUPERFAMILY beta-beta-alpha zinc fingers 122 479 IPR036236 -
Vivi5g03660 512 ProSiteProfiles Zinc finger C2H2 type domain profile. 457 479 IPR013087 -
Vivi5g03660 512 Gene3D Classic Zinc Finger 122 177 - -
Vivi5g03660 512 SUPERFAMILY beta-beta-alpha zinc fingers 5 35 IPR036236 -
Vivi5g03660 512 MobiDBLite consensus disorder prediction 358 372 - -
Vivi5g03660 512 SMART c2h2final6 8 30 IPR013087 -
Vivi5g03660 512 SMART c2h2final6 121 143 IPR013087 -
Vivi5g03660 512 SMART c2h2final6 457 479 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03660 Vivi-Chr5 129878747 129882382 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03660 1 512 C2H2 Transcription Factor Family AT1G26610 34.906 3.90e-65 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi5g03660 zf-C2H2_6 0.00011 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03660 - - psat:127106931 714.146