Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03619 ATGGTGAACAAGAGAAAAGCAAGAGAGTATGAAGGAAGAGAAGAGAACAGTGAGGAACAAAACACTGAATTGAAACAGATAAGAGAGGACGCGGCATCAGAAGCTGCTGCTCTACTAAGAGTTCGAAGAGCGAAAAACAGTTTCATTGGGGTGAGGCAGAGACCTTCAGGAAGATGGGTAGCTGAGATCAAAGACACCATACAGAATATAAGACTATGGTTAGGGACTTACGATACTGGTGAAGAAGCTGCTAGAGCTTATGATGAGGCTGCACGTTTGCTTCGCGGTGCAAACACCCGCACAAATTTCTTTCTTTGTCAATCTTCTCATTATGTTCCTGCTCTTCCTCCAAAGATTGTCAAACTCCTGCTTCTTAGGCTCAAAGTCAGAAACATTGCCTCTTCTTGTGTTCCTACTAGTAATACTACTTTTCATACTAACCACTATGATGAGTATGATGAGCAAGAAACCAAAGCAGCACCTGAACCTCTTCATTTTCACCAAATAGAAGAAAACTTTCTAGAAAGTTACGACGGTGCTAGTTATGGTTCTTCTGACATAACTACTTTTGACTGTGGCAGTGGAACTAGTGAAGAAGATTTTAACCGAAAGGGTGGCCGAGAGGATTTCAGATCGGAGTATCATTGTGCTAACAGTGTTGATGATGGTGGAAACAACCAGATTGTGGGGTGTAATGAAGAATTTGAAGACTGTGATGTTGGCGTCATTGACTTCCAGTTTCTGGATACTGTTGGATCATTAAGCCACTCTTACTCTTCTCCATTTGAGATAGCAGAGGAGATGGTGGGCCCAATGGCAGAGGAAAAATTTGACGTGGATGATTCACTGTTACTTAGAGAGACTTTTAGAATGAAGTATGAACGCAAATTCTCAGCTTGTCTTTACACCTTGATTGGGGTGTCTGAGTGTTTGAGACTACAAGTTGGAGAAGAAAATGGAAATGAAATATAA 972 0.4146 MVNKRKAREYEGREENSEEQNTELKQIREDAASEAAALLRVRRAKNSFIGVRQRPSGRWVAEIKDTIQNIRLWLGTYDTGEEAARAYDEAARLLRGANTRTNFFLCQSSHYVPALPPKIVKLLLLRLKVRNIASSCVPTSNTTFHTNHYDEYDEQETKAAPEPLHFHQIEENFLESYDGASYGSSDITTFDCGSGTSEEDFNRKGGREDFRSEYHCANSVDDGGNNQIVGCNEEFEDCDVGVIDFQFLDTVGSLSHSYSSPFEIAEEMVGPMAEEKFDVDDSLLLRETFRMKYERKFSACLYTLIGVSECLRLQVGEENGNEI 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03619 323 Pfam AP2 domain 48 96 IPR001471 GO:0003700|GO:0006355
Vivi5g03619 323 Gene3D AP2/ERF domain 47 105 IPR036955 GO:0003700|GO:0006355
Vivi5g03619 323 Coils Coil 7 34 - -
Vivi5g03619 323 SUPERFAMILY DNA-binding domain 48 104 IPR016177 GO:0003677
Vivi5g03619 323 CDD AP2 48 103 IPR001471 GO:0003700|GO:0006355
Vivi5g03619 323 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 17 210 - -
Vivi5g03619 323 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
Vivi5g03619 323 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Vivi5g03619 323 MobiDBLite consensus disorder prediction 1 25 - -
Vivi5g03619 323 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700|GO:0006355
Vivi5g03619 323 FunFam ethylene-responsive transcription factor RAP2-11 46 105 - -
Vivi5g03619 323 SMART rav1_2 47 110 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03619 Vivi-Chr5 129391615 129392586 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03619 45 132 AP2-EREBP Transcription Factor Family AT5G19790 61.364 9.32e-28 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi5g03619 AP2 2.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03619 K09286 - gmx:100793940 331.257