Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03613 ATGAGTGCAGGAAGCAGCAAAGATAAAGAGAAGGCGCGAGTGAGCCGCACCTCACTCATACTATGGCACGCTCACCAAAACGACGCCGCTGCCGTTCGGAAGCTTCTTCAAGAAGATCCCTCGCTTGTCAATGCTACCGATTACGATAACCGCACTCCGCTTCATGTCGCTTCTCTCCACGGATGGATCGAGGTTGCTAAATGCTTGATTGAATTCGGCGCTGATGTCAACGCGCAAGATCGTTGGAAGAACACCCCTTTGGCTGATGCAGAAGGATCTAAGAGGAGTAATATAATCGAGCTTTTGAAATCGCATGGAGGATTGTCTTATGGTCAAACTGGAAGCCATTTTGAACCCAGGGCGGTTCCGCCGCCGTTGCCTAATAAGTGTGATTGGGAAGTTGATCCTTCTGAGCTTGATTTCTCAAGTTCTGCGCGTATTGGAAAGGGATCTTTCGGTGAAATTTTGAAAGCCCATTGGCGCGGAACGCCAGTTGCTGTCAAGCGCATTCTTCCATCTCTTTCAGAAGATAGAATGGTGATTCAAGACTTTAGGCATGAAGTCAATTTGTTGGTGAAGCTTCGACACCCCAATATAGTTCAGTTTCTTGGAGCTGTTACTGACAGGAAGCCCCTCATGTTAATTACTGAGTATCTAAGAGGGGGTGATCTTCACCAGTACCTCAAAGATAAAGGTTCACTTAACCCTTCAACAGCTATCAGCTTTTCTATGGATATTGCCAGAGGAATGGCCTATCTTCACAATGAACCAAATGTTATAATTCATAGAGACCTAAAGCCAAGAAATGTTCTTTTAGTCAACTCTAGTGCTGACCATTTAAAAGTTGGAGATTTTGGATTGAGCAAGCTTATAACTGTCCAGAGTTCTCATGATGTATACAAGATGACTGGTGAAACTGGGAGCTATCGCTATATGGCTCCGGAAGTTTTCAAACATCGGAGGTATGAGAAGAAGGTCGATGTGTACTCCTTTGCAATGATTTTGTACGAGATGCTTGAAGGTGAACCACCTTTCGCAAGTTATGAACCTTATGATGGAGCAAAACACGCAGCTGAAGGGCACAGGCCTGTTTTTCGAGCAAAGGGTTATATCCCTGAGTTGCAGGAGTTAACGTCGCAGTGTTGGGCTTCTGATATGAATCATAGACCTCATTTCATAGAGATCCTTAAACGGCTTGAAAAGATCAAGGAAAATCTACCTTCAGATCACCACTGGCATTTGTTTGCTTCGTAA 1254 0.4466 MSAGSSKDKEKARVSRTSLILWHAHQNDAAAVRKLLQEDPSLVNATDYDNRTPLHVASLHGWIEVAKCLIEFGADVNAQDRWKNTPLADAEGSKRSNIIELLKSHGGLSYGQTGSHFEPRAVPPPLPNKCDWEVDPSELDFSSSARIGKGSFGEILKAHWRGTPVAVKRILPSLSEDRMVIQDFRHEVNLLVKLRHPNIVQFLGAVTDRKPLMLITEYLRGGDLHQYLKDKGSLNPSTAISFSMDIARGMAYLHNEPNVIIHRDLKPRNVLLVNSSADHLKVGDFGLSKLITVQSSHDVYKMTGETGSYRYMAPEVFKHRRYEKKVDVYSFAMILYEMLEGEPPFASYEPYDGAKHAAEGHRPVFRAKGYIPELQELTSQCWASDMNHRPHFIEILKRLEKIKENLPSDHHWHLFAS 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03613 417 PRINTS Tyrosine kinase catalytic domain signature 254 272 IPR001245 GO:0004672|GO:0006468
Vivi5g03613 417 PRINTS Tyrosine kinase catalytic domain signature 216 229 IPR001245 GO:0004672|GO:0006468
Vivi5g03613 417 PRINTS Tyrosine kinase catalytic domain signature 370 392 IPR001245 GO:0004672|GO:0006468
Vivi5g03613 417 SUPERFAMILY Ankyrin repeat 20 107 IPR036770 -
Vivi5g03613 417 FunFam serine/threonine-protein kinase STY46-like 134 220 - -
Vivi5g03613 417 Gene3D - 2 116 IPR036770 -
Vivi5g03613 417 SMART ANK_2a 49 78 IPR002110 GO:0005515
Vivi5g03613 417 ProSiteProfiles Protein kinase domain profile. 141 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g03613 417 Pfam Protein tyrosine and serine/threonine kinase 144 399 IPR001245 GO:0004672|GO:0006468
Vivi5g03613 417 ProSitePatterns Serine/Threonine protein kinases active-site signature. 260 272 IPR008271 GO:0004672|GO:0006468
Vivi5g03613 417 ProSiteProfiles Ankyrin repeat region circular profile. 49 81 - -
Vivi5g03613 417 CDD STKc_MAP3K-like 147 399 - -
Vivi5g03613 417 SMART serkin_6 141 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g03613 417 FunFam Integrin-linked protein kinase family 220 415 - -
Vivi5g03613 417 SUPERFAMILY Protein kinase-like (PK-like) 140 412 IPR011009 -
Vivi5g03613 417 ProSitePatterns Protein kinases ATP-binding region signature. 147 168 IPR017441 GO:0005524
Vivi5g03613 417 ProSiteProfiles Ankyrin repeat profile. 49 81 IPR002110 GO:0005515
Vivi5g03613 417 PIRSF ILK 2 417 - -
Vivi5g03613 417 Gene3D Transferase(Phosphotransferase) domain 1 221 413 - -
Vivi5g03613 417 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 85 404 - -
Vivi5g03613 417 Gene3D Phosphorylase Kinase; domain 1 133 220 - -
Vivi5g03613 417 Pfam Ankyrin repeats (3 copies) 24 105 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03613 Vivi-Chr5 129349775 129355850 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03613 2 417 MAP Kinase Kinase Kinase AT1G14000 82.212 0.0 717
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Vivi5g03613 PK_Tyr_Ser-Thr 8.1e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03613 - - gmx:100793237 778.474