Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03610 ATGGCTACTATCTTTTCTGGAGGTTCAGTTTCTCCCTTTCTTTTTCGCACCAACAAGGTTACATCTTTTACTCCCAAAACTCCAATTCTTCATCTCAAGAGACAATTTTCTGCAAAATCAGTAGCCTCTGTTGGAACCGAACCATCACTGTCACCAGCAGTTCAAACCTTCTGGAAGTGGCTACAGGAAGAAGGTGTCATCACTGGCAAGACCCCAGTGAAAGCTGGTGTGGTCACAGAAGGACTAGGATTGGTTGCTGTCAGAGACATTTCTAGGAATGATGTTATTTTGCAGGTACCAAAGAGGCTGTGGATTAATCCAGATGCAGTTGCAGCTTCTGAGATTGGGAAAGTTTGCAGGGAGTTGAAGCCATGGTTGGCTGTTATACTCTTTCTCATAAGAGAAAAATCAAGGGAAGATTCTGTTTGGAAGCACTATTTTGGTATTTTGCCACAGGAAACTGATTCTACTATATATTGGTCAGAGGAAGAGCTCCAAGAACTTCAAGGTTCTCAACTTTTGAAAACAACGGTGTCTGTGAAAGAATATGTGAAGAATGAATGTTTGAGACTAGAACAAGAAATCATTCTCCCTAATAAGCGGCTTTTTCCTAATCCTGTGACGCTGGATGACTTCTTTTGGGCGTTTGGAATTCTCAGATCAAGGACGTTTTCTCGTCTGCGCGATGAAAATTTAGTTATAGTTCCAATGGCAGACTTGATTAATCACAGTGCCAGAGTAACTACAGAGGATCAAGCTTACGAAGTTAAAGGAGCAGGTGGCCTTTTCTCTCGGGATTACCTGTTTTCCCTAAAGAGCCCCCTTTCTGTCAAGGCCGGAGAACAGGTATATATCCAATATGATATGAACAAAAGCAATGCAGAGTTGGCTCTAGACTACGGTTTCATTGAACCAAATGAAAATCGAAATGCATACACTCTGACACTGGAGATATCTGAGTCGGACCCTTTTTTTGATGACAAACTAGACGTTGCTGAGTCCAACGGTTTTGCTCAGACATCATACTTTGACATCTTCTATAATCGCACTCTTCCACCTGGATTGCTTCCATATCTGAGACTAGTAGCGCTAGGGGGTACCGACGCTTTCTTATTGGAATCACTGTTCAGAGACTCTATATGGGGTCATCTTGAGTTGCCTGTCAGCCGTGACAATGAGGAGCTACTATGCAGAGCGGTTCGAGATGCCTGCAAATCTGCCCTTGCTGGTTATCATACAACCATTGAACAGGATCGGGAGCTGAAAGAAGAAAATCTAGATTCGAGGCTTGCAATAGCTGTTGGAATAAGAGAAGGGGAAAAGGTGGTCCTGGAGCAAATTGACGGGATCTTCAAGCAGAAAGAATCGGAATTGGACCAGTTAGAGTATTATCAAGAAAGGAGGCTCAAGGATCTTGGACTTTGCGGAGAAAATGGCGATATCCTTGGAGACCTTGGAAAATACTTCTAA 1470 0.4306 MATIFSGGSVSPFLFRTNKVTSFTPKTPILHLKRQFSAKSVASVGTEPSLSPAVQTFWKWLQEEGVITGKTPVKAGVVTEGLGLVAVRDISRNDVILQVPKRLWINPDAVAASEIGKVCRELKPWLAVILFLIREKSREDSVWKHYFGILPQETDSTIYWSEEELQELQGSQLLKTTVSVKEYVKNECLRLEQEIILPNKRLFPNPVTLDDFFWAFGILRSRTFSRLRDENLVIVPMADLINHSARVTTEDQAYEVKGAGGLFSRDYLFSLKSPLSVKAGEQVYIQYDMNKSNAELALDYGFIEPNENRNAYTLTLEISESDPFFDDKLDVAESNGFAQTSYFDIFYNRTLPPGLLPYLRLVALGGTDAFLLESLFRDSIWGHLELPVSRDNEELLCRAVRDACKSALAGYHTTIEQDRELKEENLDSRLAIAVGIREGEKVVLEQIDGIFKQKESELDQLEYYQERRLKDLGLCGENGDILGDLGKYF 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03610 489 SMART set_7 71 294 IPR001214 GO:0005515
Vivi5g03610 489 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 50 302 - -
Vivi5g03610 489 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 311 482 IPR036464 -
Vivi5g03610 489 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 304 468 - -
Vivi5g03610 489 Pfam Rubisco LSMT substrate-binding 320 444 IPR015353 -
Vivi5g03610 489 ProSiteProfiles SET domain profile. 64 288 IPR001214 GO:0005515
Vivi5g03610 489 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 51 428 - -
Vivi5g03610 489 Gene3D set domain protein methyltransferase, domain 1 50 303 - -
Vivi5g03610 489 CDD SET_RBCMT 70 303 IPR044431 GO:0016279|GO:0018022
Vivi5g03610 489 Gene3D - 304 468 IPR036464 -
Vivi5g03610 489 ProSiteProfiles Plant LSMT protein-lysine methyltransferase family profile. 3 487 IPR011192 GO:0009507|GO:0030785
Vivi5g03610 489 Pfam SET domain 81 287 IPR001214 GO:0005515
Vivi5g03610 489 SUPERFAMILY SET domain 50 310 IPR046341 -
Vivi5g03610 489 PIRSF RMT_SET 1 488 IPR011192 GO:0009507|GO:0030785
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03610 Vivi-Chr5 129324084 129326569 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03610 51 243 NAC Transcription Factor Family AT3G56570 29.208 5.33e-10 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vivi5g03610 SET 1.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03610 K00592 - ag:AAA69903 907.901