Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03608 ATGGGTAGGTCACCTTGCTGTGAGAAAGTTGGTTTGAAGAAAGGTCCATGGACTCCTGAAGAAGATCAAAAACTCATTGCTTACATTGAAGAGTTTGGTCATGGAAGCTGGCGTGCATTACCTTCAAAAGCTGGGCTTCAAAGATGTGGGAAGAGCTGCAGACTAAGATGGACTAACTACCTCCGACCAGACATCAAAAGAGGAAAGTTCAGCTTACAGGAAGAGCAAACCATTATTCAACTTCACGCTCTTCTCGGAAACAGATGGTCAGCCATAGCAGCTCAACTTCCAAGGAGAACAGACAACGAGATAAAAAACTATTGGAACACACATCTCAAGAAAAGACTAACAAGAATGGGAATAGACCCGACAACTCACAAACCAAAAACAGATACCACATCTGGTGGTGGAAGTAGCAACTGTCAGTACTCCAAAGACTCCGCAAATCTCAGCCACATGGCTCAGTGGGAAAGTGCTCGTTTAGAAGCTGAAGCCAGACTCGTTAGAGAAACCAACAAAATGAAAGTTCAAAGACAACTAGAGTTTGAATCCTCCAAACCTCAAACACCTGCCAGACTTTTCCTCAACAAAATCACACCGCTTGTTCAACCCTCACTTCCACCTTGTCTTGATATTCTCAAAGCATGGCAGAGTTCTTGGTCCAAACCAACACAGAGCAACGAAACGTTGAACAGTAACAACAGCAGTAAAATGCATAGTATGTATGCTATGATGTTGTCTAATGATGAGAATCTTGAATCTCCAACTTCTACTTTGAACTTCCCTGGAACAACCCTGCTTCCTCTGCCTCCTCTTCCTCTTCCTGTTCATGTTCCTGTTTCTGTTCCTATGACCAACAACAGCAACAACAACAACGTTGTACCGTTTAATCAAACTCCACTTCCTTTACCCGACAACACCAACAATGATGATGAGATATGGAAACAATTCAACTTAACAAAACAGAACACAGAAGGTGATCATGAAGACGACGATATAATGGCGGCTGTTGAGGCATTTAGATCATCATGCGGTGGATTTGACAATAACATCCCTCAAGCTCTCGAGAATGGTGGTAGTGGTGGTGGTGGTGATCATGAAAACTTGGATGAAAGCAGCAACATGATGTGTAACGTGAATCTGGAAGAGAATAAGCATTATTGGAATAGCATACTTGGTTTGGTCAATGAATCTGATGATATGAACATTGTCCTTGGATGA 1221 0.4251 MGRSPCCEKVGLKKGPWTPEEDQKLIAYIEEFGHGSWRALPSKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIAAQLPRRTDNEIKNYWNTHLKKRLTRMGIDPTTHKPKTDTTSGGGSSNCQYSKDSANLSHMAQWESARLEAEARLVRETNKMKVQRQLEFESSKPQTPARLFLNKITPLVQPSLPPCLDILKAWQSSWSKPTQSNETLNSNNSSKMHSMYAMMLSNDENLESPTSTLNFPGTTLLPLPPLPLPVHVPVSVPMTNNSNNNNVVPFNQTPLPLPDNTNNDDEIWKQFNLTKQNTEGDHEDDDIMAAVEAFRSSCGGFDNNIPQALENGGSGGGGDHENLDESSNMMCNVNLEENKHYWNSILGLVNESDDMNIVLG 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03608 406 CDD SANT 69 112 IPR001005 -
Vivi5g03608 406 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vivi5g03608 406 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vivi5g03608 406 MobiDBLite consensus disorder prediction 351 370 - -
Vivi5g03608 406 Coils Coil 153 173 - -
Vivi5g03608 406 FunFam MYB transcription factor 68 129 - -
Vivi5g03608 406 MobiDBLite consensus disorder prediction 118 144 - -
Vivi5g03608 406 CDD SANT 16 61 IPR001005 -
Vivi5g03608 406 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 286 - -
Vivi5g03608 406 Gene3D - 69 116 - -
Vivi5g03608 406 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vivi5g03608 406 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vivi5g03608 406 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vivi5g03608 406 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vivi5g03608 406 FunFam MYB-related transcription factor 13 66 - -
Vivi5g03608 406 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vivi5g03608 406 SMART sant 13 63 IPR001005 -
Vivi5g03608 406 SMART sant 66 114 IPR001005 -
Vivi5g03608 406 Gene3D - 11 67 - -
Vivi5g03608 406 MobiDBLite consensus disorder prediction 126 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03608 Vivi-Chr5 129214431 129216176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03608 1 398 MYB Transcription Factor Family AT3G01140 47.264 5.97e-105 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi5g03608 Myb_DNA-binding 9.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03608 K09422 - gmx:100809025 462.225