Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03604 ATGGCGACAACACCAGAAGAAGAGCACATGCAAAATCTCAGATCCAGAGCAACAGAGCTTTTCATCAGAGAAGAATGGAACCCTTCAATCGAAGCTTACTCCCAGTTCATCACCCTCTGCACCCACCACCTCTCTCTTCCTCAATCTGACTTCAACTCACTCAAGCTTCGCAAATCCCTCTGCATAGCTCTATGCAACAGAGCAGAAGCGAAATCAAGACTGCGCGAATTCAACTCCGCGTTGCTAGATTGTGATCACGCTTTAGAAATTGATGCTGCCCATTTCAAAACCCTAGTTTGTAAAGGTAAGATTTTGCTTTCGCTTAATAGATATTCTATGGCTCTTCATTGCTTTAGAATGGCCCATCTTGATCCTCAAGCGAATGGGAATGATGATTTTCTTGGGTTTTGGCAAAAATGTAGAAAGTTTGAATTTTTATCAAGGACGGGGTTTCTTGATCTTTCGGATTGGGTTTCGAATGGGTATCCGGGTAAGGCTCCCGAGCTTGCTGAATATATTGGGGATGTTCAGATTAGGAAATCTGAGATTAGTGGGCGGGGGATTTTCGCTACTAAGGATATTGATGCAGGGTCTTTGATCTTGATTACGAAGGCAATTGCGATGGAGAGGAGTATATTGGCAGGTAAAGATTTGAGTGAAGATACACAGTTAGTTATGTGGAAGAATTTTGTTGATAAAGTTATAGAATTGGTTAGAAAATGTCATAAAACTAGAGATTTGATTGAGAAATTGTCGATAGGGGGAAATGAGGATGAACTCGACGTGCCTGATGTAGATCTGTTTAGACCCGAGAGTATTGGTGAAATGAGTTCACGCGAGGAAATTGATATGGTTAAGTTATTGGCTATATTGGATGTTAATTCTCTGACTGAGGATGCGGTTTCGGCCAATGTTTTGAGGAAGAACAATGATTGTTATGGTGTAGGGCTATGGTTGCTTCCTTCGTTCATCAATCACTCGTGTACTCCTAATGCGAGGCGTTTGCATGTTGGGGATTATTTAATAGTTCATGCTTCGAGAGATTTGAAAGCGGATGAAGAGCTAACTTTTGCTTATTATGATCCACTTGCTCCGTTGAATAAGAGAAGAGATATGTCTGTGACATGGGGGATTCAATGCAGGTGTAAGAGGTGTAAGTTTGAGGTGGATATCTTGTACAACAAGAAAGAGTTGAAGGAGATTGAGATCGGTATTGAAAAAGGGATGGATGTTGGTAGTTTGGTGTATAAACTCGAGGAACAAATGAAGAGATGGAAGTTAAGAGGGAAAGAGAGGGGATACATGAGGGCTTCGTTTTGGTCGTTGTATTCGGAGGCTTATGGTTCGGAGAAATGTATGAAAAAATGGGGAAGGAGGATTCCGATATTCGATGCAGTGGTTGATAGCATCACAGATGCAGTGGGAAGTGATCACAGGGTGCTTAAGATTCTGAATGAGGAGTTGAAGAAAAAAGCCAGTGGTGGTAGTGGTGATGGAAATTTGGAGATGGAGAAAGTTTTTAGGTTAGGAAGAGAAGTATATGGGAAGGTAATGAAAAAGCATGCAATGAGGAAATTGCTTGAGCTAATTGATTGA 1596 0.4142 MATTPEEEHMQNLRSRATELFIREEWNPSIEAYSQFITLCTHHLSLPQSDFNSLKLRKSLCIALCNRAEAKSRLREFNSALLDCDHALEIDAAHFKTLVCKGKILLSLNRYSMALHCFRMAHLDPQANGNDDFLGFWQKCRKFEFLSRTGFLDLSDWVSNGYPGKAPELAEYIGDVQIRKSEISGRGIFATKDIDAGSLILITKAIAMERSILAGKDLSEDTQLVMWKNFVDKVIELVRKCHKTRDLIEKLSIGGNEDELDVPDVDLFRPESIGEMSSREEIDMVKLLAILDVNSLTEDAVSANVLRKNNDCYGVGLWLLPSFINHSCTPNARRLHVGDYLIVHASRDLKADEELTFAYYDPLAPLNKRRDMSVTWGIQCRCKRCKFEVDILYNKKELKEIEIGIEKGMDVGSLVYKLEEQMKRWKLRGKERGYMRASFWSLYSEAYGSEKCMKKWGRRIPIFDAVVDSITDAVGSDHRVLKILNEELKKKASGGSGDGNLEMEKVFRLGREVYGKVMKKHAMRKLLELID 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03604 531 SMART set_7 174 366 IPR001214 GO:0005515
Vivi5g03604 531 Pfam SET domain 185 359 IPR001214 GO:0005515
Vivi5g03604 531 SUPERFAMILY SET domain 175 386 IPR046341 -
Vivi5g03604 531 CDD SET_SMYD 288 385 - -
Vivi5g03604 531 Gene3D SET domain 274 389 IPR046341 -
Vivi5g03604 531 ProSiteProfiles SET domain profile. 174 360 IPR001214 GO:0005515
Vivi5g03604 531 SUPERFAMILY TPR-like 9 122 IPR011990 GO:0005515
Vivi5g03604 531 PANTHER TPR DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_5G12710) 6 528 - -
Vivi5g03604 531 Gene3D Tetratricopeptide repeat domain 1 133 IPR011990 GO:0005515
Vivi5g03604 531 SMART tpr_5 61 94 IPR019734 GO:0005515
Vivi5g03604 531 SMART tpr_5 95 127 IPR019734 GO:0005515
Vivi5g03604 531 Gene3D SET domain 174 253 IPR046341 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vivi5g03604 SET 5.2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03604 - - mtr:11446296 850.506