Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03603 ATGGAGAGTAGTACTACAAGCTCTGAACTCCCTCCTGGCTTTAGGTTTCATCCAACTGATGAAGAATTAATTGTGTATTACCTTTGTAATCAAGCCACATCAAAACCATGCCCTGCATCTATCATACCAGAAGTTGATATTTATAAATTTGATCCTTGGGAATTGCCAGATAAATCTGAGTTTGTAGAGAATGAATGGTATTTCTTTAGTCCAAGAGAAAGAAAGTACCCGAATGGGGTGAGGCCTAATAGAGCAACTTTATCTGGATATTGGAAAGCTACTGGCACAGACAAACCAATCAATACTGGATCAAAGCAAATTGGAGTGAAAAAATCTTTAGTCTTTTACAAGGGCAGGCCACCAAAGGGAATCAAAACTAATTGGATTATGCACGAGTACCGATTAATCGGATCGCAAAAACAAACTAGCAAACATATTGGATCCATGAGACTAGATGACTGGGTTTTGTGCAGAATCTATAAGAAGAAACACATGGGAAAAACATTGCAGCAAAAAGAGGACTATTCGACGCTTCAATTTAACGATTCTACGATAGCGAATATCGATGAACAAGAAAGGATGAACATGAACCTTACAAGGAGTTGTTCACTTACTTATCTTTTGGATATGAATTACTTTGCTCCAATGTTATCTGATGGTTCAACTTTGGATTTTCAAATCAATAATTCCAATATTGGGATAGACCCTTTTGTGAAATCTCAGCAAGTTGAAATGAGTAACCATTATGAACCAGATTCACATAGTAGCATCACAAATCAGCCATTATTTGTGAAGCAAATGCATAATTATTTAGGATAA 819 0.3639 MESSTTSSELPPGFRFHPTDEELIVYYLCNQATSKPCPASIIPEVDIYKFDPWELPDKSEFVENEWYFFSPRERKYPNGVRPNRATLSGYWKATGTDKPINTGSKQIGVKKSLVFYKGRPPKGIKTNWIMHEYRLIGSQKQTSKHIGSMRLDDWVLCRIYKKKHMGKTLQQKEDYSTLQFNDSTIANIDEQERMNMNLTRSCSLTYLLDMNYFAPMLSDGSTLDFQINNSNIGIDPFVKSQQVEMSNHYEPDSHSSITNQPLFVKQMHNYLG 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03603 272 SUPERFAMILY NAC domain 5 162 IPR036093 GO:0003677|GO:0006355
Vivi5g03603 272 ProSiteProfiles NAC domain profile. 10 162 IPR003441 GO:0003677|GO:0006355
Vivi5g03603 272 FunFam NAC transcription factor 19 166 - -
Vivi5g03603 272 Gene3D NAC domain 19 166 IPR036093 GO:0003677|GO:0006355
Vivi5g03603 272 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 228 - -
Vivi5g03603 272 Pfam No apical meristem (NAM) protein 11 135 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03603 Vivi-Chr5 129098597 129099886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03603 5 216 NAC Transcription Factor Family AT1G69490 66.216 1.21e-108 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi5g03603 NAM 4.2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03603 - - gmx:100785110 411.764