Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03598 ATGAAAGAGGCTAGTGTTAAAGATGACACTAATGTTCTAACTCATTACCAATCTTCTTATTCTTCTCCTTCAATGGGAACTGTTTATGCAAATATGGATTCTCTATCACTTAACTATGCTGCTTCTTCTTCATCTCAAGATGGCTATATCTCTAAGGAAGGTACTACTACTAACTTGTCCTTACCACTTATGAGAGATTGTTATCTTACAAGAAACTTTGAAGAACACAGCAACAGTGATGATGTTGGAGAAGGCAATGGTTATGATTATGGTGATGGTGTTGAGGAAAACAGTGACAAAGTTAACCTTAATGAAGAGCACAACCCTAGTGAGAATAATAGTGGACATTCTAAACTATGTGCAAGAGGTCATTGGAGACCTGCAGAAGATTCTAAGCTAAAGGAACTTGTTGCTCTTTATGGTCCTCAGAACTGGAACCTCATTGCAGAGAAGCTTCAAGGAAGATCAGGTAAGAGTTGTAGGCTTAGATGGTTCAACCAGTTAGATCCAAGAATAAACAGAAGAGCATTTAGTGAAGAAGAGGAAGAAAGACTAATGCAAGCTCATAGGATTTATGGCAACAAATGGGCTATGATTGCTAGACTTTTCCCTGGAAGAACAGATAATGCAGTTAAGAATCACTGGCATGTTATAATGGCTAGAAAGTATAGAGAACAATCAAGTGCTTACAGGAGAAGGAGGCTAAATCAATCTGTTTACAAAAGAATAGAAGATAACACAAGCTTTGTCACAAGAGATATGGATCCAGTTTCATCATCCTATACTGCTTTTACCTTCCCAAATGGCTATAATATGACTAGTTTTCCATATGCATCTTTTCATGGTGGTGTTGAGTGTGGCTTAAATGGCTTAAATGGTTCATCTCACATGAATGGTGGCAAAGAAACAATCTCAAGCAACAAACAGTCCCTTTCTCCAATGGATTTCTTTTCAGAAATGAGATGGCATGATAGGCCAAGAGATTTACTCAATCAACCAATGAGTTTCTACCATAATTATCCCCAATATATGATGTCAATGCAGCAGCAACAACAACAACAACAAAACAACAGTCACAACAACAATAGTACTAATATTTATAGTTTCTCATCAAATTCAACCACAGTAGCGACAAGAGCACAAATATTGAACAGTGAAGTTTCACTATCATCAGTGGCAGCAGAAGAAAGAGATCAAGTTCTGATGAGTAATCCACCTCCACCTTCAGATGCAATTCCATTTATTGATTTTCTTGGAGTAGGAGCCACATGA 1272 0.375 MKEASVKDDTNVLTHYQSSYSSPSMGTVYANMDSLSLNYAASSSSQDGYISKEGTTTNLSLPLMRDCYLTRNFEEHSNSDDVGEGNGYDYGDGVEENSDKVNLNEEHNPSENNSGHSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDPRINRRAFSEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRLNQSVYKRIEDNTSFVTRDMDPVSSSYTAFTFPNGYNMTSFPYASFHGGVECGLNGLNGSSHMNGGKETISSNKQSLSPMDFFSEMRWHDRPRDLLNQPMSFYHNYPQYMMSMQQQQQQQQNNSHNNNSTNIYSFSSNSTTVATRAQILNSEVSLSSVAAEERDQVLMSNPPPPSDAIPFIDFLGVGAT 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03598 423 PANTHER MYB PROTEIN-RELATED 113 361 - -
Vivi5g03598 423 ProSiteProfiles Myb-like domain profile. 169 219 IPR001005 -
Vivi5g03598 423 Gene3D - 175 246 - -
Vivi5g03598 423 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 122 168 IPR017930 -
Vivi5g03598 423 MobiDBLite consensus disorder prediction 78 118 - -
Vivi5g03598 423 ProSiteProfiles Myb-like domain profile. 122 168 IPR001005 -
Vivi5g03598 423 FunFam MYB transcription factor 122 173 - -
Vivi5g03598 423 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 169 223 IPR017930 -
Vivi5g03598 423 CDD SANT 125 166 IPR001005 -
Vivi5g03598 423 CDD SANT 176 216 IPR001005 -
Vivi5g03598 423 SMART sant 173 221 IPR001005 -
Vivi5g03598 423 SMART sant 121 170 IPR001005 -
Vivi5g03598 423 Gene3D - 122 173 - -
Vivi5g03598 423 FunFam MYB transcription factor 175 245 - -
Vivi5g03598 423 SUPERFAMILY Homeodomain-like 122 215 IPR009057 -
Vivi5g03598 423 Pfam Myb-like DNA-binding domain 122 168 IPR001005 -
Vivi5g03598 423 Pfam Myb-like DNA-binding domain 174 217 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03598 Vivi-Chr5 128970503 128972255 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03598 98 262 MYB Transcription Factor Family AT1G69560 71.257 1.10e-79 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi5g03598 Myb_DNA-binding 6.7e-15 CL0123