Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03595 ATGGCTTCAACAATTCATATGAAGACGAAGTATCATAACGATATTGGAAAATCAAACTTCATTTCATTCAATCTACACGGGGCTTACTTGACACATGAGACGATACTCAAGAATCCCTTAGTGATTGGGGTCGCCAGTGAAAAGAAAAAGAAGAAGACTCAGAGGACTACTGTCAGCATAGTTGACCTTAACGTGAGAGAGATGAAACCCTACAAGATGATGAGCTCGGCTTTTCATTTTATAGTTAATGCAAAAACCTTAAGGCCAGTTCTAGACGAAAACTTTAAGATTTTCATGGCTAGACCGTTTAAGCTGGTGAAGAACATTAATGATACGAAGGAGCTTTGGAAACTTGCTGTTCGTATCCATCACAAATGGACAGTTGTTAATAAGAACAAGGAACATTTTGAGTTGGTTGTCGTTGACAAAGATGGTTGTGACATCCATGTCAAAGTTCCACATCCTTTTAAACAAGCCTATGATTCACTATTAACCGTTGACAACACTTATACAATCTCGAACTTCCAAGTCTCTCTTAATGATTTACTTTTCAAGCCTTCAGATCACAAGTTTATATTGACATTTACTGGTGGTACATCTGTTACAGACAAGAATAAACATGATATTCCTGCAAAGCCACTTAAATTCACTTCTTTTACTGATATCATGACTGAGAATTGGAAAAAGGATGTTCTAATAGATGTCATTGGAATGGTGACAGAAATTGGTTACACCCTACTTCAACAAGGGGGCAAGAAACAGCAGATCAATATATTGTTGAAAGATTTGTCGAACAACATTTTGAATTGCACTTTGTGGGAAGGATATGCAGTGCAATTCCATGATTTCAGTAAGAATCGAAAGGATACCACTCCAATCATAATTGTTTTGCAATATGCAAAAGTCAAGGAAGAAGGAAAGTATCCATTGTCTGTTTCCAACACTTTCAACGTTACAAGGTTGCATGTCAATGATGACTTACCTCAGATAAAAGATTTTATTGGAAGCCTACCAAAATACACTGAATCGGAATCTTCAAGCCAAGCTTTGAGTTTGCAGTCCCAAACTATGTCACAATACTCAAATTCTTCTCAGCACAGTCTTTATGATAAGCTTATGTATAAGGCAACTGTACATCCTTTGGCTGATATTGTAAAACTCAAGGAGCTGGCTCAATGTGTTACCGTGGCAACGATCACCAAACTGAAAGCTGCTCAAGGTGGATGGTATTACCAAGCATGTCATGAGTGTCCTAGGGTTGCCAAAGGAATGCTACCACCTTATGAATGTCCGCTTGGCCACAAAACAGAGACTGCAATTTACAGGTATAAAATTTTAATTGAGGTTTTTAATGCTGGAACTAAAGCTACCTTTGTAATATGGGACCGTGAAGCTTTTCAACTTTTGAAGGCTGGCATTACGGACCCTCTTGAGTTCCCTGCGACACTTGATACTTTAGTTGGAATGACAATGGTTTTCAAAGTCAAATGGCAACCTGACTGGGACAATGGATCTGTTATGTCTATACTTGAGGATGACATTGTTAAAAGGGATATACTGCGTTCGTTTGGCCAGGAATTGCCTGATTCCCAGATGATAACCACTCCTAATCTAACACAGAACAATGAGAGTGTTGCTGAAGCTTCTCATTTGGACGATTGGGACATCATTCCGGAAACCGATATTACGTCTAATACATTGTCGGAACCGCTTACACCAACATCAGCTGCCAAACGGATTGCTCCACATGAATCACAAGACATTACTCCTTTGTCTCAGACGTCTGAAGGACAACAGTCTTTAACAAAAATGAAAAACATATCAAACTGGAGAATTAGATTGCTTTCCATGAATATTTTGTGA 1863 0.3859 MASTIHMKTKYHNDIGKSNFISFNLHGAYLTHETILKNPLVIGVASEKKKKKTQRTTVSIVDLNVREMKPYKMMSSAFHFIVNAKTLRPVLDENFKIFMARPFKLVKNINDTKELWKLAVRIHHKWTVVNKNKEHFELVVVDKDGCDIHVKVPHPFKQAYDSLLTVDNTYTISNFQVSLNDLLFKPSDHKFILTFTGGTSVTDKNKHDIPAKPLKFTSFTDIMTENWKKDVLIDVIGMVTEIGYTLLQQGGKKQQINILLKDLSNNILNCTLWEGYAVQFHDFSKNRKDTTPIIIVLQYAKVKEEGKYPLSVSNTFNVTRLHVNDDLPQIKDFIGSLPKYTESESSSQALSLQSQTMSQYSNSSQHSLYDKLMYKATVHPLADIVKLKELAQCVTVATITKLKAAQGGWYYQACHECPRVAKGMLPPYECPLGHKTETAIYRYKILIEVFNAGTKATFVIWDREAFQLLKAGITDPLEFPATLDTLVGMTMVFKVKWQPDWDNGSVMSILEDDIVKRDILRSFGQELPDSQMITTPNLTQNNESVAEASHLDDWDIIPETDITSNTLSEPLTPTSAAKRIAPHESQDITPLSQTSEGQQSLTKMKNISNWRIRLLSMNIL 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03595 620 MobiDBLite consensus disorder prediction 586 602 - -
Vivi5g03595 620 SUPERFAMILY Nucleic acid-binding proteins 383 514 IPR012340 -
Vivi5g03595 620 SUPERFAMILY Nucleic acid-binding proteins 214 338 IPR012340 -
Vivi5g03595 620 Pfam Domain of unknown function DUF223 137 232 IPR003871 -
Vivi5g03595 620 Gene3D - 207 347 IPR012340 -
Vivi5g03595 620 PANTHER OS03G0429900 PROTEIN 51 500 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vivi5g03595 620 SUPERFAMILY Nucleic acid-binding proteins 102 202 IPR012340 -
Vivi5g03595 620 Gene3D - 101 203 IPR012340 -
Vivi5g03595 620 CDD RPA1_DBD_B_like 234 338 - -
Vivi5g03595 620 MobiDBLite consensus disorder prediction 580 602 - -
Vivi5g03595 620 CDD RPA1_DBD_A_like 117 201 - -
Vivi5g03595 620 Gene3D - 361 517 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03595 Vivi-Chr5 128900266 128912832 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03595 106 333 Core DNA Replication Machinery Family AT5G45400 21.901 9.92e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03595 - - vvo:131605417 1240.33