Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03594 ATGGACTCTCTACCACTTAACTATGCTGCTTCTTCTTTCTCTCAAGACAGCTATGTCTCTAAGGAGGGTACTACTACTAACTGGTCTTCACCACTTATGAGAGAATGTTATCTTACAAATAGAAACTTTAAAGAAAACAACAATAGTGATGATGTTGGCGAAAGTAATGGTTCTGATTCTGGTAACGGTGTTGAAGAAAACAGTGACCAAATTAACCTTAATGAAGAGCACAGCCCTAATGAGAATAATAGTGGACATTCTAAACTATGTGCAAGAGGTCATTGGAGACCTGCAGAAGATTCTAAGCTCAAAGAACTTGTTGCTCTTTATGGTCCTCAGAACTGGAACCTCATTGCTGAGAAGCTACAAGGAAGATCAGGTAAGAGTTGTAGGCTTAGATGGTTCAACCAGTTAGATCCAAGAATAAACAGAAGAGCTTTCAGTGAAGAAGAGGAAGAAAGACTAATGCAAGCTCATAGGATTTATGGAAACAAATGGGCTATGATTGCAAGGCTTTTCCCTGGAAGAACTGATAATGCAGTGAAGAATCACTGGCATGTTATAATGGCTAGAAAGTATAGAGAACAATCAAGTGCTTACAGAAGAAGGAGACTGAATCAATCGGTTTACAAAAGAATAGAAGATAACACAAGCTTTGTCTCGAGAGATATGGATCCAGTTTCATCACCCTATTGTGCTTTTAACTTCCCAAATGGCTATAATATGACTAGTTTTCCATATGCATCTTTTCATGATGGTGTTGAGTATTTTAGCCCAATGAGTTTCTACCATAATCATCCCCAACATATGATGTCAATGCAACAGCAACAACTAAACAAGAATCACAATAATAGTAATAATATTTTCAGTTTCTCATCAAATTCAACCACAGCAGCAACAAGAGCACAGTTATTGAACAGTGAAGTTTCGCTATCGTCAGTGGCAACAGAAGAAAGAGATCAAGTTCTGATGAGTAATCCCCCTCCATCAGATGCAATTCCATTTATTGATTTCCTTGGAGTAGGAGCCACATGA 1035 0.3807 MDSLPLNYAASSFSQDSYVSKEGTTTNWSSPLMRECYLTNRNFKENNNSDDVGESNGSDSGNGVEENSDQINLNEEHSPNENNSGHSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDPRINRRAFSEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRLNQSVYKRIEDNTSFVSRDMDPVSSPYCAFNFPNGYNMTSFPYASFHDGVEYFSPMSFYHNHPQHMMSMQQQQLNKNHNNSNNIFSFSSNSTTAATRAQLLNSEVSLSSVATEERDQVLMSNPPPSDAIPFIDFLGVGAT 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03594 344 FunFam MYB transcription factor 92 143 - -
Vivi5g03594 344 FunFam MYB transcription factor 145 215 - -
Vivi5g03594 344 ProSiteProfiles Myb-like domain profile. 92 138 IPR001005 -
Vivi5g03594 344 Pfam Myb-like DNA-binding domain 92 138 IPR001005 -
Vivi5g03594 344 Pfam Myb-like DNA-binding domain 144 187 IPR001005 -
Vivi5g03594 344 SUPERFAMILY Homeodomain-like 92 185 IPR009057 -
Vivi5g03594 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 139 193 IPR017930 -
Vivi5g03594 344 MobiDBLite consensus disorder prediction 43 68 - -
Vivi5g03594 344 CDD SANT 95 136 IPR001005 -
Vivi5g03594 344 Gene3D - 92 143 - -
Vivi5g03594 344 CDD SANT 146 186 IPR001005 -
Vivi5g03594 344 Gene3D - 145 216 - -
Vivi5g03594 344 PANTHER MYB PROTEIN-RELATED 92 281 - -
Vivi5g03594 344 MobiDBLite consensus disorder prediction 1 26 - -
Vivi5g03594 344 ProSiteProfiles Myb-like domain profile. 139 189 IPR001005 -
Vivi5g03594 344 SMART sant 91 140 IPR001005 -
Vivi5g03594 344 SMART sant 143 191 IPR001005 -
Vivi5g03594 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 92 138 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03594 Vivi-Chr5 128883873 128885308 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03594 68 227 MYB Transcription Factor Family AT1G69560 72.840 1.15e-79 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi5g03594 Myb_DNA-binding 5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03594 K09422 - gmx:100804537 333.183
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g03594 5 128883873 128885308 Vivi5g03594 5 128883873 128885308 ECH