Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03563 ATGGCTCTTACGATGAGAGCTGCAGCGGCGGCGGCGCCCCGCGGTTTGCGCCGCTTCTTCTGTTCGAATCCAGTCCCCTCTTCTCCCACTTTCCCTTTCGCTTCTACGCAACCTTCCGGAACTACTTCCGCTCGACAGATGGCCGATCCCAACACCAACCTCTTCGTCTCTGGGCTTAGCAAACGTACTACAACAGAGAGACTGCGAGAAGAGTTTCAAAAGTTTGGTGAAGTGGTTCATGCGAGGGTGGTAACTGACCGAGTCTCAGGTTACTCTAAGGGGTTTGGTTTTGTTCAATATGCTACTTTAGAAGATGCTGCTAAAGGCATTGAAGGCATGGATGGCAAGTTTTTGGATGGCTGGGTTATATTTGCAGAGTATGCAAGACCAAGACCCCCACCTGGAGAAGCTGTAAATAATACGACTAAACAGTACGGCCGACCTTATTAG 450 0.5022 MALTMRAAAAAAPRGLRRFFCSNPVPSSPTFPFASTQPSGTTSARQMADPNTNLFVSGLSKRTTTERLREEFQKFGEVVHARVVTDRVSGYSKGFGFVQYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPGEAVNNTTKQYGRPY 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03563 149 FunFam RNA recognition motif-containing protein 33 143 - -
Vivi5g03563 149 PANTHER NUCLEOLAR PROTEIN 8 35 134 - -
Vivi5g03563 149 SMART rrm1_1 53 126 IPR000504 GO:0003723
Vivi5g03563 149 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 54 120 IPR000504 GO:0003723
Vivi5g03563 149 SUPERFAMILY RNA-binding domain, RBD 37 146 IPR035979 GO:0003676
Vivi5g03563 149 Gene3D - 28 140 IPR012677 -
Vivi5g03563 149 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 52 130 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03563 Vivi-Chr5 128221377 128223530 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03563 42 132 Eukaryotic Initiation Factors Gene Family AT3G11400 36.264 1.98e-12 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03563 - - psat:127105180 292.352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g03563 5 128221377 128223530 Vivi5g03563 5 128221377 128223530 ECH