Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03552 ATGGCTCTAACGATGAGAGCTGCAGCGGCGGCGGCGCCCCGCGGTTTGCGCCGCTTCTTCTGTTCGAACCCAACCTCCTCTTCTCCCACTTTCCCTTTCGCTTCTACGCAACCTTCCGGAGCTACTTCCGCTCGACAGATGGCCGATCCCAACACCAACCTCTTCGTCTCTGGGCTTAGCAAACGTACTACAACGGAGAGACTGCGAGAAGAGTTTCAAAAGTTTGGTGAAGTGGTTCATGCGAGGGTGGTAACTGACCGAGTCTCGGGTTACTCTAAGGGGTTTGGTTTTGTTCAATATGCTACTTTAGAAGATGCTGCTAAAGGCATTGAAGGCATGGATGGCAAGTTTTTGGATGGCTGGGTTATATTTGCAGAGTATGCAAGACCAAGACCCCCACCCGGAGAAGCTGTAAATAATTATGGCCGACCTTATTAG 438 0.5114 MALTMRAAAAAAPRGLRRFFCSNPTSSSPTFPFASTQPSGATSARQMADPNTNLFVSGLSKRTTTERLREEFQKFGEVVHARVVTDRVSGYSKGFGFVQYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPGEAVNNYGRPY 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03552 145 PANTHER NUCLEOLAR PROTEIN 8 35 133 - -
Vivi5g03552 145 MobiDBLite consensus disorder prediction 27 48 - -
Vivi5g03552 145 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 54 120 IPR000504 GO:0003723
Vivi5g03552 145 SMART rrm1_1 53 126 IPR000504 GO:0003723
Vivi5g03552 145 FunFam RNA recognition motif-containing protein 33 142 - -
Vivi5g03552 145 Gene3D - 23 137 IPR012677 -
Vivi5g03552 145 SUPERFAMILY RNA-binding domain, RBD 36 143 IPR035979 GO:0003676
Vivi5g03552 145 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 52 130 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03552 Vivi-Chr5 127972975 127975090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03552 29 132 Eukaryotic Initiation Factors Gene Family AT3G11400 32.692 1.56e-12 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03552 - - psat:127105180 278.1