Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03544 ATGGATCAACAAAACCAAACCATGCGTTTGGTTCTTTCCACTGATGCTAAGCCTAGGTTGAAATGGACTCATGAACTTCACCAAAAATTCACTGATGCTATTAACCAACTTGGAGGTGCAGAAAAGGCGACACCGAAGAGTTTGATGAGGGCGATGGCGATTCCAGGACTCACTTTGTATCATCTCAAGAGTCATTTACAGAAATATAGACTTGGAAAAAACCAACTTGTAGAAACATGTTCTGATGAGAAACAAGATTACATAGAGATTCAAAGTAGTGACAGTCAATGCAGCAGAGAAATCAGTGTCGCGAACGCGAATCAAACCACGGAAAGTTTAAAGATTGCTGAGGCACTTGAGATACAAATGGAAGTACAAAAGAAACTCTATGAACAAATTGAGGTGCAGAAACATTTACAGTTTAGAATTGAGGCTCAAGGAAAGTACTTACAATCGGTACTAATGAAGGCGCAAGAAGCACTTGCAGGATACGGTTCTTCTTCTTCGTCCGTGTCTGGTGTAGAACATGCTAAAGCTGAACTTTCTCAGTTACTATCAACCATCAATAACAATGCATGTCCTAGTTCTCCGATTTCAGAACTAACAGAAACACGAGGTTTGAGTTTAAACTTTGGCGAGAGGAAACAAAATAGAGGAACTATGTGTTCTTTATCGAGTTCTCTAACATCATCTGAAAGTTCCGAGCGAAAAGATGAAAAACAAACCGTAAACGAGGCAGAGAACACTCCGAATTACAATAGTGTTTCGTTTGAATTGCCACTGATGGATATTGGTACTAATGATGGGGCTAGTGGTAGAAAAAGAAGTGCTGTTACTGATTTTGATTGTGGCAGTGTTGATCAACCAGATGGCAAAAAATTGAAGGAATCTGAAGTGTCACAAATGCTTGACTTGAACAGCAAGTATGAGAGAGAGATTGAGTCATGTTCATTAGAAATAGATTTGAATTGCAGTTCAAGCTTTTAG 987 0.3921 MDQQNQTMRLVLSTDAKPRLKWTHELHQKFTDAINQLGGAEKATPKSLMRAMAIPGLTLYHLKSHLQKYRLGKNQLVETCSDEKQDYIEIQSSDSQCSREISVANANQTTESLKIAEALEIQMEVQKKLYEQIEVQKHLQFRIEAQGKYLQSVLMKAQEALAGYGSSSSSVSGVEHAKAELSQLLSTINNNACPSSPISELTETRGLSLNFGERKQNRGTMCSLSSSLTSSESSERKDEKQTVNEAENTPNYNSVSFELPLMDIGTNDGASGRKRSAVTDFDCGSVDQPDGKKLKESEVSQMLDLNSKYEREIESCSLEIDLNCSSSF 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03544 328 Pfam MYB-CC type transfactor, LHEQLE motif 114 159 IPR025756 -
Vivi5g03544 328 FunFam Two-component response regulator 13 77 - -
Vivi5g03544 328 Gene3D - 16 75 - -
Vivi5g03544 328 MobiDBLite consensus disorder prediction 218 254 - -
Vivi5g03544 328 NCBIfam myb-like DNA-binding domain, SHAQKYF class 17 72 IPR006447 GO:0003677
Vivi5g03544 328 SUPERFAMILY Homeodomain-like 16 73 IPR009057 -
Vivi5g03544 328 Coils Coil 116 136 - -
Vivi5g03544 328 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 4 251 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03544 Vivi-Chr5 127855141 127856853 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03544 1 317 G2-like Transcription Factor Family AT1G69580 47.879 3.49e-80 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vivi5g03544 Myb_CC_LHEQLE 3e-21 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g03544 5 127855141 127856853 Vivi5g03544 5 127855141 127856853 ECH