Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03543 ATGGATCAACAAAACCAAACCATGCGTTTGGTTCTTTCCACTGATGCTAAGCCTAGGTTGAAATGGACTCATGAACTTCACCAAAAATTCACTGATGCTATTAACCAACTTGGAGGTGCAGAAAAGGCGACACCGAAGAGTTTGATGAGGGCGATGGCGATTCCAGGACTCACTTTGTATCATCTCAAGAGTCATTTACAGAAATATAGACTTGGAAAAAACCAACTTGTAGAAACATGTTCTGATGAGAAACAAGATTACATAGAGATTCAAAGTAGTGACAGTCAATGCAGCAGAGAAATCAGTGTCGCGAACGCGAATCAAACCACGGATTTAAAGATTGCTGAGGCACTTGAGATACAAATGGAAGTACAAAAGAAACTCTATGAACAAATTGAGGTGCAGAAACATTTACAGTTTAGAATTGAGGCTCAAGGAAAGTACTTACAATCGGTACTAATGAAGGCGCAAGAAGCACTTGCAGGATACGGTTCTTCTTCTTCGTCCGTGTCTGGTGTAGAACATGCTAAAGCTGAACTTTCTCAGTTACTATCAACCATCAATAACAATGCATGTCCTAGTTCTCCGATTTCAGAACTAACAGAAACACGAGGTTTGAGTTTAAACTTTGGCGAGAGGAAACAAAATAGAGGAACTATGTGTTCTTTATCGAGTTCTCTAACATCATCTGAAAGTTCCGAGCGAAAAGATGAAAAACAAACCGTAAACGAGGCAGAGAACACTCCGAATTACAATAGTGTTTCGTTTGAATTGCCACTGATGGATATTGGTACTAATGATGGGGCTAGTGGTAGAAAAAGAAGTGCTGTTACTGATTTTGATTGTGGCAGTGTTGATCAACCAGATGGCAAAAAATTGAAGGAATCTGAAGTGTCACAAATGCTTGACTTGAACAGCAAGTATGAGAGAGAGATTGAGTCATGTTCATTAGAAATAGATTTGAATTGCAGTTCAAGCTTTTAG 984 0.3923 MDQQNQTMRLVLSTDAKPRLKWTHELHQKFTDAINQLGGAEKATPKSLMRAMAIPGLTLYHLKSHLQKYRLGKNQLVETCSDEKQDYIEIQSSDSQCSREISVANANQTTDLKIAEALEIQMEVQKKLYEQIEVQKHLQFRIEAQGKYLQSVLMKAQEALAGYGSSSSSVSGVEHAKAELSQLLSTINNNACPSSPISELTETRGLSLNFGERKQNRGTMCSLSSSLTSSESSERKDEKQTVNEAENTPNYNSVSFELPLMDIGTNDGASGRKRSAVTDFDCGSVDQPDGKKLKESEVSQMLDLNSKYEREIESCSLEIDLNCSSSF 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03543 327 Coils Coil 115 135 - -
Vivi5g03543 327 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 4 250 IPR044848 GO:0003700
Vivi5g03543 327 Pfam MYB-CC type transfactor, LHEQLE motif 113 158 IPR025756 -
Vivi5g03543 327 FunFam Two-component response regulator 13 77 - -
Vivi5g03543 327 SUPERFAMILY Homeodomain-like 16 73 IPR009057 -
Vivi5g03543 327 Gene3D - 16 75 - -
Vivi5g03543 327 MobiDBLite consensus disorder prediction 217 253 - -
Vivi5g03543 327 NCBIfam myb-like DNA-binding domain, SHAQKYF class 17 72 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03543 Vivi-Chr5 127855132 127856853 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03543 1 316 G2-like Transcription Factor Family AT1G69580 48.485 1.21e-80 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vivi5g03543 Myb_CC_LHEQLE 3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03543 - - gmx:100805252 403.675