Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03538 TTTCTAGTCAGAAAGACTGGTAGCGAATTCAATGCTGTTGTCCTCAAGCGATTGATCATGAGCAAAGACATCCAACGTTCAATTTCTTTGGAAATGTTGATTGATACCTTGAAGGGGAAGGAGGGCAAAATCGGTGCTGTTGTAGGTTTTGTTACTGATGATTTCGGAGTATATGATGTTCCGGCGGCAATTAAAGTTACAGCATTAGGGTTCACAGAGACGGCACGAGCACGTATCGAAAGTGCAGGTGGAGAATGCCTAACCTTTGATGAATTTGCCACGAGGAGTCCCTTTGGACAGAATACGGTATGA 312 0.4391 FLVRKTGSEFNAVVLKRLIMSKDIQRSISLEMLIDTLKGKEGKIGAVVGFVTDDFGVYDVPAAIKVTALGFTETARARIESAGGECLTFDEFATRSPFGQNTV 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03538 103 SUPERFAMILY Ribosomal proteins L15p and L18e 2 102 IPR036227 -
Vivi5g03538 103 PANTHER 60S RIBOSOMAL PROTEIN L18 1 103 IPR000039 GO:0003735|GO:0005840|GO:0006412
Vivi5g03538 103 Gene3D - 1 103 - -
Vivi5g03538 103 Pfam Ribosomal protein 60S L18 and 50S L18e 1 103 IPR021131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03538 Vivi-Chr5 127610400 127610903 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03538 1 103 Cytoplasmic Ribosomal Protein Gene Family AT2G47570 57.692 1.37e-34 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03538 K02883 - pop:7491291 137.887