Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03528 ATGGTTTCCCGGGAAAACAACAATTGGCTCTTCGATTACGGCTTAATCGATGATATTTCCCCTCCCATTTCCACCTTCATGGCCACTCCTTCCCCCGGTTTCGCCTGGCCCACCCAACCGCCCTTCAATCTTTCTTCCAATGTCGGTGCTGAAATTGATGTCTCATTAGGGGATTCTGACAGTCTCAAAGAGTCTGGTTCAAAGAAGAGGGGCAGATCTGAGTCATGTGCTGCCACTAGCTCCAAGGCATGTCGGGAGAAGTTGCGTAGAGATAGGCTTAATGACAAGTTTGTTGAATTGGGCTCCATTTTGGAGCCTGGAAGGCCTGCCAAAACAGACAAGGCTGCTATCCTGATTGATGCTGTCCGAATGGTGACACAGTTGAAGGGTGAAGCCGAAAAGTTGAAAGATGCTAATTCGGGTCTTCAAGAAAAGATTAAAGAATTGAAGGTTGAGAAGAATGAACTCCGTGACGAGAAACAGAGGCTCAAAGCAGAGAAAGAGAAGTTGGAGCAGCAGCTGAAATCTATGAATACACAACCCAGCTTCTTGCCTCCCCCCACTGCCCTTCCTGCTGCAATGCCTGCTGCATTTGCTGCACAAAGCCAAGCCCATGGCAACAAGTTGGTACCTTTTATTAGTTATCCAGGAGTTGCAATGTGGCAATTTATGCCACCTGCTGCAGTGGATACCTCCCAGGATCATGTACTTCGTCCTCCAGTTGCCTAA 729 0.4815 MVSRENNNWLFDYGLIDDISPPISTFMATPSPGFAWPTQPPFNLSSNVGAEIDVSLGDSDSLKESGSKKRGRSESCAATSSKACREKLRRDRLNDKFVELGSILEPGRPAKTDKAAILIDAVRMVTQLKGEAEKLKDANSGLQEKIKELKVEKNELRDEKQRLKAEKEKLEQQLKSMNTQPSFLPPPTALPAAMPAAFAAQSQAHGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03528 242 SMART finulus 83 134 IPR011598 GO:0046983
Vivi5g03528 242 MobiDBLite consensus disorder prediction 57 78 - -
Vivi5g03528 242 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 77 147 IPR036638 GO:0046983
Vivi5g03528 242 PANTHER BHLH TRANSCRIPTION FACTOR 4 242 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Vivi5g03528 242 FunFam Transcription factor bHLH34 68 126 - -
Vivi5g03528 242 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 77 128 IPR011598 GO:0046983
Vivi5g03528 242 Gene3D - 80 156 IPR036638 GO:0046983
Vivi5g03528 242 CDD bHLH_AtILR3_like 82 157 - -
Vivi5g03528 242 Pfam Helix-loop-helix DNA-binding domain 81 128 IPR011598 GO:0046983
Vivi5g03528 242 Coils Coil 125 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03528 Vivi-Chr5 127483709 127487127 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03528 1 242 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 71.311 2.85e-115 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi5g03528 HLH 6.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03528 - - psat:127100684 416.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g03528 5 127483709 127487127 Vivi5g03528 5 127483709 127487127 ECH