Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03520 ATGGCTAGCAGTAGCAGCAGCGGCTCCTCTTCTTCAGATCTGATGAGATTGCCAGAGAGGAGGAATTATTATGACGTGTTTGTCAGCTTCCGAGGTGAAGATACTCGCTTCAATTTCACTGATCATCTTTTTACTGCCTTGAAGAAAAAATGCATTAGTGCATTTAGGGATGGAAATGATCTTCAAAAAGGTGAACCCATAGGACCCGAACTCCTTCGTGCAATCAAAGACTCTCGGGTTTTCGTTGTGGTATTCTCAAGGAACTATGCTTATTCGACATGGTGCTTACAGGAATTGGAAATGATATGTGAATGCGCTCAAATGTCTAGAAAATGGGTTCTGCCTGTTTTTTATGATGTTGATCCTGCAGACGTGAGACATCAAAGAGGAATTTATGGTAAGGCCTTTGTCAAACATGAACAAAGATTCCAGCAACAATCTGAGAAGGTGCAAAGATGGAGGAAAGTTGTAACTCATCTTGCCAATTGCTCCGGATGGGATCTACGCCATAAATCACAATCTGCAGGGATCAGAAAGATTGTTCGAAGGATAAAAAATATATTGCATTGCAGATCTTCAAGTGTTTTAACAGATTTAGTTGGGATGGATTCTCGTATTGAAGAGTTATTTCTACTATTGGACTCACTTGATGAAGTCCGTGCTGTAGGAATTTGTGGGATGGGAGGAATAGGGAAGACAACACTTGCTATGGTTTTAATCGAGAGAATCTCTCATCAATTTGGTGCATTTTGTGATATTATTGATGTAAGAAAAATGTATGGATTACATGGCCCACTTGGTGCACAGAAGCAAATTCAAAATCAAATTCTTGGTGATAAACACCATCAAATGTGCAATCTCTATAATGCAACTAAGTCGATGCGAAGTAAGCTATGTCGTAAAAGGTCCCTTTTGATTCTTGATAATGTTGATCATGTAGAACAACTAGAAAAAATAGTTGTGACTCGTGAACTGCTAGGTGAGGGAAGCAGAATCATTGTCATTTCTAGAGATGAGCATATATTGAAACAGTATAGGATGGATGCAGTTTACCAAGTTCCACTTTTGAATTGGAGTAACTCTCTTCAATTATTGCGTCGAAAAGCTTTCAAATTTGATCGTGTTATTATGAGTAATTATGAAGAGTTGGCGCATAGCATACTACATTATTCCAATGGCCTACCACTAGCAATTGCAACATTAGGCTCATTTTTGTATGGTCGAGATATCTCTGAATGGAGAAGTGCATTGGATAGATTGAGAGAAAGTCCGAACAAAGATGTCATGGATGTGCTGCGATTAAGTTTTGATGGGCTAGAGGAAACAGAAAAAGAAATATTTCTTCATATTGCTTGTTTTTTCAACATGCATACGGAGAAGTATGTTACAAATGTTCTAGATTGTTGTGGATTTGATGCTGATAATGGATTAAGCCTTCTCGTTGATAAATCACTTATAAGCATTCAGGATGAAATGATTGTAATGCATAACCTGTTGGAAGAGCTAGGCAGAAAAATTGCTCAAGAAAATTCAATCAAAGAGCCAAGAAAGTGGAGAAGGTTGTGGTTCGACGAACAACTCGACAAGGTTATGATGGACAATATGGAAAAACATGTTGAAGCCATAGTTTTGGATCATGAATATGATGACTATAGTGAAGAGGATGAAGTGGTAGTCGATAACTTTTCAAATATTAGATTGCTCATCATCAAGTATGTGAAATTATCAGGAAGCCTCAATTATCTTTCTAACGAATTGAGATATATAGAGTGGTGCGAATATCCTTTCATGTATTTGCCATCAAGTTTTCAACCTAATCAACTTGTTGAGTTGATATTGGAGTATAGCAGCATCAAACAACTCTGGGAAGGAAATAATCTTCCGAAATTGAGAACTTTGGATCTGAGCCACTCCAAAAATCTAATAAAGATGCCAGACTTTGGAGAGATCCCGAATCTTGAGCGGTTAAATCTGGAAAGATGTATACAACTTGTAGAGTTGGATCCATCTATTGGGCTTCTAAGAAAGATTGTTTCCTTGAATTTAAAAGATTGCAAAAATCTAGTAAACATACCCAACAACATATTTGGTCTCAACTCTCTTAAAGATCTAAATATGTCAGGGTGTTCCAAGTTGTTTAACAATCCAAGGAATTTGAGTAAAAGAGAGAGTGCATCACATTTTCGATCAACGTCCTCCAACTTCAAATGGACCATGATGCCTTACCATTCTTGGCTTCCAACTCCCACAACACACATACATTTGTTGCCTTGCTTGCTTAGCTTATCTAGTTTGCGTGAACTTGATATTAGTTTTTGTGGTCTACGCCAAATCCCAGAAGCAATCAGATGTCTACGCGGGATAGAAAGATTAAATATAGGGGGAAACAATTTTGTGAAACTGCCTTGTCTAAGGGAGCTTTCCAAACTTGTATATTTAAATCTGGAGCATTGCAAGCTGTTGGTGTCTTTACCTCTGCTTCCTTTTCTTACTGCTCTCGAGCACAGTCTTTGTGTAAACAAGTACGGGAAGGCAATAGGATTGCTCATTTTCAACTGTCCTAAATTGAGCAAGACAGATCAATGTAGTAGAAAAGCATTTTCATGGATGACACAAATCATTCAAACTAACAAAGAATATCCTGCCTTCTTTGATATCGGTATCGTTACTCCAGGAAGTGAAATACCGAGTTGGTTCAACAACCAGAGTGCCGGTGATTCAATATCGGTATCTCCTTTAAAGCATGAGAATGACAAGAACATAATTGGCTTTGCATGTTGTGCTGTATTTTCTGCCGCACCTCGTTATCCAACAATGTTAAGAAGTTCTACGCATAGTCCCCATGCCGAGATGACATTGCGGTTTGCTAATGTTCATGGCTATCCGCTGATATACCACAATTTCTGTCTTCCAGTAATCCTCGACCGAGATCTTATTACAGTCAAATCAAATCACATATGGCAGATAATAATCCATTTCCCGCAGGACTGGTCTTATGATATTATGAACGACATTATCCTTGTTCAAGTTGTTAGGGATGAATGTTTAGATGTGGAGGTTACGAATTGTGGGTATCGTTGGATATATAAACAGGATATACAAGAGTTTAACCTAACAATGATGCACCCTGGACATTCCTTCACTCGGAAGCGCAAGTTTTCGTCTGCGCTTGTCTCTCATCCATTTTCAAAACTGTCAAAGTAA 3204 0.3833 MASSSSSGSSSSDLMRLPERRNYYDVFVSFRGEDTRFNFTDHLFTALKKKCISAFRDGNDLQKGEPIGPELLRAIKDSRVFVVVFSRNYAYSTWCLQELEMICECAQMSRKWVLPVFYDVDPADVRHQRGIYGKAFVKHEQRFQQQSEKVQRWRKVVTHLANCSGWDLRHKSQSAGIRKIVRRIKNILHCRSSSVLTDLVGMDSRIEELFLLLDSLDEVRAVGICGMGGIGKTTLAMVLIERISHQFGAFCDIIDVRKMYGLHGPLGAQKQIQNQILGDKHHQMCNLYNATKSMRSKLCRKRSLLILDNVDHVEQLEKIVVTRELLGEGSRIIVISRDEHILKQYRMDAVYQVPLLNWSNSLQLLRRKAFKFDRVIMSNYEELAHSILHYSNGLPLAIATLGSFLYGRDISEWRSALDRLRESPNKDVMDVLRLSFDGLEETEKEIFLHIACFFNMHTEKYVTNVLDCCGFDADNGLSLLVDKSLISIQDEMIVMHNLLEELGRKIAQENSIKEPRKWRRLWFDEQLDKVMMDNMEKHVEAIVLDHEYDDYSEEDEVVVDNFSNIRLLIIKYVKLSGSLNYLSNELRYIEWCEYPFMYLPSSFQPNQLVELILEYSSIKQLWEGNNLPKLRTLDLSHSKNLIKMPDFGEIPNLERLNLERCIQLVELDPSIGLLRKIVSLNLKDCKNLVNIPNNIFGLNSLKDLNMSGCSKLFNNPRNLSKRESASHFRSTSSNFKWTMMPYHSWLPTPTTHIHLLPCLLSLSSLRELDISFCGLRQIPEAIRCLRGIERLNIGGNNFVKLPCLRELSKLVYLNLEHCKLLVSLPLLPFLTALEHSLCVNKYGKAIGLLIFNCPKLSKTDQCSRKAFSWMTQIIQTNKEYPAFFDIGIVTPGSEIPSWFNNQSAGDSISVSPLKHENDKNIIGFACCAVFSAAPRYPTMLRSSTHSPHAEMTLRFANVHGYPLIYHNFCLPVILDRDLITVKSNHIWQIIIHFPQDWSYDIMNDIILVQVVRDECLDVEVTNCGYRWIYKQDIQEFNLTMMHPGHSFTRKRKFSSALVSHPFSKLSK 1067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03520 1067 Pfam TIR domain 24 188 IPR000157 GO:0007165
Vivi5g03520 1067 Pfam Leucine Rich Repeat 607 625 IPR011713 -
Vivi5g03520 1067 SMART till_3 23 163 IPR000157 GO:0007165
Vivi5g03520 1067 SUPERFAMILY Toll/Interleukin receptor TIR domain 20 166 IPR035897 -
Vivi5g03520 1067 PRINTS Disease resistance protein signature 297 311 - -
Vivi5g03520 1067 PRINTS Disease resistance protein signature 221 236 - -
Vivi5g03520 1067 PRINTS Disease resistance protein signature 391 405 - -
Vivi5g03520 1067 PRINTS Disease resistance protein signature 625 641 - -
Vivi5g03520 1067 Gene3D - 23 185 IPR035897 -
Vivi5g03520 1067 SUPERFAMILY L domain-like 559 856 - -
Vivi5g03520 1067 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 24 718 IPR044974 GO:0006952
Vivi5g03520 1067 Gene3D - 356 440 IPR042197 -
Vivi5g03520 1067 Pfam NB-ARC domain 206 426 IPR002182 GO:0043531
Vivi5g03520 1067 SUPERFAMILY "Winged helix" DNA-binding domain 427 528 IPR036390 -
Vivi5g03520 1067 Gene3D Ribonuclease Inhibitor 554 733 IPR032675 -
Vivi5g03520 1067 Gene3D Ribonuclease Inhibitor 734 868 IPR032675 -
Vivi5g03520 1067 Gene3D - 186 351 IPR027417 -
Vivi5g03520 1067 FunFam Disease resistance protein (TIR-NBS-LRR class) 20 190 - -
Vivi5g03520 1067 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 450 IPR027417 -
Vivi5g03520 1067 ProSiteProfiles TIR domain profile. 22 188 IPR000157 GO:0007165
Vivi5g03520 1067 Pfam C-JID domain 891 1033 IPR045344 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03520 Vivi-Chr5 127439134 127447794 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03520 24 840 WRKY Transcription Factor Family AT4G12020 31.250 1.80e-83 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03520 - - vvo:131605388 1289.63