Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03518 ATGAACAAACATTCCGTCATCACCCCGAGAAAGTTCAACGGTGGAGGGAAGCTCTCACCCAAGCAGCCAATATCTCTGGATGGGATCTACATGATAAGTAAGCCACAATATGCAGAGATTGAAATTATTGTTCAAGATATAATAGATACGTTTGGTTACAAATTTTCATATCTTCCAAATGATTTAGTTGGAATGCTTTCTCCTATAGAGGAATTGGAAAAATGTTTACTTTTGGACTCAGTTGATGATGTTCGGGCTGTTGGAATTTGTGGGATGGGCGGAGTAGGGAAGACAACTCTTGCTTCTGTTTTATATGGCAAAATGAAAGTCTCTAATCACTTCGAAGTGTGCTGTCTTATTGACGATGTAAGTAACATTTTTCGAAAAGACGGTCCAATTGGGGTACTCAAGCAAATTCTACATCAAATTCTAGGCGGAGAACACCGTGAGATATACAATCTTTATGATGCAACTAATTTGATACAGTGTAGACTATGTCGTTGTAGGGTTCTATTAGTTTTTGATAATGTTGATCATAGGGAACAATTGGAGAAACTTGCTGTGAATCGTAAATCGTTAGTTGCAGGGAGTAGAATCATTGTAGTTTGTAGAGATGCTCATATCTTGGAAGAGTATGGAGTGGATGCACTTTACAAAGTTCCACTCTTAAATCAGACAAACTCTCGTCAATTATTTTATCGAAAAGCCTTCAAATGTGATAATATTATGAGTGATACCTATAAGGAGTTGGAAAATGACATAATAAATTATGCTGATGGCCTTCCACTAGTGATTAAAGTATTAGGTTCATTTTTGTTTGGCCGAAGTATCTCTGAATGGAAAAGTGCTTTGGCTAGATTGCGAGAAAGTCCAAACAAAGTTATTATGGATGCGCTGCAGTTTAGTTTATACGGGCTAGAGAAAATGGAATTACAAATATTTCTTGACATTGCTTGTTTTTTCAACGGGCGTGAGGAAAAATTTGTTAAACATGTTTTAAATTGTTGTGGATGTCATCCTGACATTGGATTAAGAGTTCTTGTCGATAAATCACTTATAAGCATTTCAGCTGAAAGAAAGATTGAAATGCATGCTATGTTGGAAGGGCTAGGTAGAAAACTTGTTCAACTACATTCAACTGAAGAAACAAGAAAATGGAGTAGATTGTGGGTCCATAAAGATTGCTACGATGTTATGTCAGAGAATATGGAAAAGAATGTTGATGCCATAGTTTTGAATGGAAATGAAAGCGATACAGAAGTATTGATGGCTGATTCATTGTCAAACATGAGTCGTCTTAGATTGCTCATACTTATGGGTGTTAAAGTTTTAGGAAGCCTCAACAATCTTTCTAATCAATTAAGGTATGTTGAATGGACGAGCTATCCTTTCATGTATTTGCCATCAAGTTTTCAGCCCAATCAACTTGTTGAGTTGATATTGAAGTATAGCAGCATCAAACAACTCTGGGAAGGCAAGAAGAATCTGCCCAATTTGAGGACTCTGGATTTAAGCTACTCTGAAAATTTAATCAAGATGCAAGATTTTGGACATGTCACGAATCTTGAACGGCTAAACCTTGAAGGGTGTGTAAAGCTTGTGGAGTTAGATCCATCAATTGGTCTTGCGAAGAAGCTTGTTTTCTTGAATTTGAAAAATTGCACAAGTCTTATATGCATACCTAACTGCATATATCATCTCAACTCTCTTGAATATTTAAATCATTGCAGTTGTTCCGAAGCGTTTAACAATCCATGCCATTTAGAATTGCTTTCCTTGGCCAGCTTACATGCTTTGTGCGAACTTGATATTAGTTTTTGTGGTCTAAGCCAACTCCCAGCAGATACTATTGGAGGTCTGCATTGTTTACAAATATTAAATTTAGGGGGAAACAATTTTGTGACACTACCTAGTCTCGCACAGCTTTCCGAACTTGCATATTTGAATTTGGAGCATTGCATGCTGTTGAAATCTTTTCCCGAGCTTCCTTCACCTACTGCTATCAAGCCCAGCAAATATTGGAGAGCAGGGATGTATATTTTCAACTGTCCTGAATTGGTTGACAGGCAAAGTTGCAGTAGCATGACTTTTTCATGGATGATGCAATTCGTTCTAGCAAACCAAGAATCCTCTTCCTCCTTTCATTGGATGGAAATTGTTATTCCCGGCAGTGATATTCAAAGCTTGTTTAACAATCAGAAGGTGGGCAGATCAGTGACAATAAACCCATACCATATTATGGAAGACAGTAATGTCATTGGAGTTGTTTGTTGTGTAGTATTTTCTGTGGCGCGTCGTGAACCAACTACAACTGCAAATGGACAGAAACCTGTCTTATATCTAAGCTTTCGTAGAGATGACAAAAAGGTTCATTTTAGCATTCTACTTGATACAACTCTTGTTATGGACCAATCGAGTCACATGTGGTTAACCTATTTCACTAAGGAATCATTCTTTAATATTCTGAAAGATATAGACAATAAAGATGGCAATTCTATGAGAATAGAAGCTTTCATTGTAGACAAAGGTTTGGGTGTGAAGGTGAACAGGTGCGGGTATTGTTGGGTAGATAAACAATATCCACTACCGTTAAATTAA 2598 0.3718 MNKHSVITPRKFNGGGKLSPKQPISLDGIYMISKPQYAEIEIIVQDIIDTFGYKFSYLPNDLVGMLSPIEELEKCLLLDSVDDVRAVGICGMGGVGKTTLASVLYGKMKVSNHFEVCCLIDDVSNIFRKDGPIGVLKQILHQILGGEHREIYNLYDATNLIQCRLCRCRVLLVFDNVDHREQLEKLAVNRKSLVAGSRIIVVCRDAHILEEYGVDALYKVPLLNQTNSRQLFYRKAFKCDNIMSDTYKELENDIINYADGLPLVIKVLGSFLFGRSISEWKSALARLRESPNKVIMDALQFSLYGLEKMELQIFLDIACFFNGREEKFVKHVLNCCGCHPDIGLRVLVDKSLISISAERKIEMHAMLEGLGRKLVQLHSTEETRKWSRLWVHKDCYDVMSENMEKNVDAIVLNGNESDTEVLMADSLSNMSRLRLLILMGVKVLGSLNNLSNQLRYVEWTSYPFMYLPSSFQPNQLVELILKYSSIKQLWEGKKNLPNLRTLDLSYSENLIKMQDFGHVTNLERLNLEGCVKLVELDPSIGLAKKLVFLNLKNCTSLICIPNCIYHLNSLEYLNHCSCSEAFNNPCHLELLSLASLHALCELDISFCGLSQLPADTIGGLHCLQILNLGGNNFVTLPSLAQLSELAYLNLEHCMLLKSFPELPSPTAIKPSKYWRAGMYIFNCPELVDRQSCSSMTFSWMMQFVLANQESSSSFHWMEIVIPGSDIQSLFNNQKVGRSVTINPYHIMEDSNVIGVVCCVVFSVARREPTTTANGQKPVLYLSFRRDDKKVHFSILLDTTLVMDQSSHMWLTYFTKESFFNILKDIDNKDGNSMRIEAFIVDKGLGVKVNRCGYCWVDKQYPLPLN 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03518 865 Pfam Leucine rich repeat 599 655 IPR001611 GO:0005515
Vivi5g03518 865 ProSiteProfiles Leucine-rich repeat profile. 622 643 IPR001611 GO:0005515
Vivi5g03518 865 Pfam NB-ARC domain 80 293 IPR002182 GO:0043531
Vivi5g03518 865 Pfam Leucine Rich Repeat 475 494 IPR011713 -
Vivi5g03518 865 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 56 317 IPR027417 -
Vivi5g03518 865 Gene3D Ribonuclease Inhibitor 375 591 IPR032675 -
Vivi5g03518 865 Gene3D - 222 307 IPR042197 -
Vivi5g03518 865 SUPERFAMILY "Winged helix" DNA-binding domain 295 399 IPR036390 -
Vivi5g03518 865 Gene3D Ribonuclease Inhibitor 592 672 IPR032675 -
Vivi5g03518 865 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 40 688 IPR044974 GO:0006952
Vivi5g03518 865 Gene3D - 53 216 IPR027417 -
Vivi5g03518 865 PRINTS Disease resistance protein signature 494 510 - -
Vivi5g03518 865 PRINTS Disease resistance protein signature 86 101 - -
Vivi5g03518 865 PRINTS Disease resistance protein signature 258 272 - -
Vivi5g03518 865 PRINTS Disease resistance protein signature 164 178 - -
Vivi5g03518 865 SUPERFAMILY L domain-like 419 664 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03518 Vivi-Chr5 127372647 127375812 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03518 63 663 WRKY Transcription Factor Family AT5G45050 30.401 8.08e-69 247